Medicago truncatula (barrel medic): 11433546
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Entry
11433546 CDS
T01716
Name
(RefSeq) RNA-binding protein 208 isoform X2
KO
K13201
nucleolysin TIA-1/TIAR
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11433546
03041 Spliceosome [BR:
mtr03041
]
11433546
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
11433546
Spliceosome [BR:
mtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
11433546
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_10
RRM_occluded
RRM_8
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
11433546
NCBI-ProteinID:
XP_003603560
UniProt:
G7J2U2
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All DBs
Position
3:53903617..53914256
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AA seq
424 aa
AA seq
DB search
MQQALLQQQQMYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLL
AEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANS
SREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDH
QDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSN
EDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEE
AAMAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYTAAE
LLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYDGYAGNSSRQQL
MYYR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagctttgcttcaacaacaacagatgtatcaccatcctggcatgctcgctgct
gccgccatgacccagatggagcctgtaccaagtggaaatctgcctcctggttttgatgct
tctgcatgccgtagcgtttatgtaggaaatattcatgtaaacgtcaccgataaacttctc
gcagaagtttttcagagtgccggccctcttgctgggtgcaagctcatacgaaaagaaaag
tcctcttatggttttgtggactaccatgatcgagcatccgcagcgcttgcaataatgaca
ttacatggacggcaactatatggtcaagcactaaaggtgaattgggcatatgctaacagc
agcagggaggatacctcagggcacttcaatgtttttgttggtgatttgagtccagaggtt
actgatgcaactttatttgcatgcttctcagtctatactacttgttctgatgctagggtt
atgtgggatcacaaaactggtcgctcaaaaggatatggttttgtttctttccgtgatcat
caggatgcccaaagtgccataaatgatatgacaggtaaatggctgggaaataggcaaata
agatgcaattgggcaactaaaggagctggtggcagctcaaatgaagagaagatcaatgac
agccaaaatgctgttgtactcacaaatggatcttcagatggaggtcaagataacagcaac
gaggatgctcctgaaaacaatccttcatacaccacagtttatgttggcaaccttccccat
gatgtaacacaagctgaactccattgtcaattccatgcattgggggctggggtacttgag
gaggtccgagttcagagcggcaagggttttggatttgtcagatacaatactcacgaggaa
gcagcaatggccattcagatggctaatggaagaccggttcgtgggaagactatgaagtgt
tcatggggtagcaaaccaactcctcctggaacagcttcaaatccattacctcctcctgct
gcacaaccatatcaaatacttcctactgcagggatgaaccaaggctatactgccgctgag
ttgttggcttatcagcgccagctggccttgagtcaggccgctgtttctggcctttcagga
caagctcttcttcaaatgtctggacagcatggcctagctcctgcttcaatgggtataaac
tctgcggcatctcaagccatgtatgacggatatgctggtaattcgtcaagacagcagctt
atgtactatcgttaa
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