Medicago truncatula (barrel medic): 11434456
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Entry
11434456 CDS
T01716
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X2
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11434456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11434456
Spliceosome [BR:
mtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
11434456
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Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
PRP4
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SCAP
WD40_like
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
MIOS_WD40
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
11434456
NCBI-ProteinID:
XP_024639351
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Position
5:complement(8989879..8993163)
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AA seq
462 aa
AA seq
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MQDLTMRRRAAALAIPTNDMAVRAHLRYLGEPITLFREREMERRDRLRMIMAKLDADDQL
EKLMKALEDEEAATSTPNDEAEDDRQYPFHNEGSNSLLNARIDIAKYSLVRAALRIQRAR
RRRDDPDEDVNAEMDWTLKQAGNLNLEFSEIGDVRKLTGCSFSRDGKGLATCSLTGATKL
WSMPDVKKVSTFKRHTESATDVAYSPVHNNHLATASADWTNDHNNDSATATINWTANYWN
DQGSLLRTFKGHSDRLARIAFHPSGKYLGTASDDKTWRLWDVETGEELLLQEGHSREVYS
LAFHHDGSLAASCGKDALARVWDLRTKRSLLALEGHVKPIRGISFSPNGYHLATGGEDNT
CRIWDLRKNKSLYTIAAHSKLISQVKFEPQEGYFLVTTSSDMTAKVWSGRDFKHVKTLSG
HEAIVSSVDVLGDGGYIVTVSHDRTIKLWSSGSTSEHTMDVD
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacctcacgatgaggaggcgtgctgctgctcttgctattcccacaaatgacatg
gcagtgagggcccatcttcgctatctgggtgagccaattaccctctttagggagagggag
atggagagacgagacaggttgcggatgattatggcaaagctggatgctgatgatcagctg
gaaaagctaatgaaagctcttgaggatgaagaggccgcaacttctactccaaatgacgag
gctgaggatgatcggcagtatccttttcacaacgaaggctcaaattctctcctcaatgca
aggattgatattgctaaatattctttagtaagggctgcattgcgtatccaacgtgcccgg
agaagaagagatgatccggatgaagatgtgaatgcggagatggactggacattgaagcag
gcaggaaatttgaatcttgaattcagtgaaatcggagatgttcggaaacttactggctgc
tcgttctcccgtgatggaaaaggacttgctacctgttctctaactggagctaccaagttg
tggagcatgcctgatgtaaaaaaagtttctaccttcaagaggcacaccgagagtgctact
gatgttgcatattctcctgtgcacaataatcatttagcaactgcctctgctgactggaca
aatgatcacaataatgattcagcaactgccactattaactggacagcaaactattggaat
gatcaaggatctcttttgagaacatttaagggtcatagtgatcgtcttgcacgcattgcc
ttccatccatcagggaagtacttgggcactgctagcgatgacaagacatggaggttatgg
gacgttgaaacgggagaggagttacttcttcaagaaggtcatagtagagaagtatatagt
ttggcttttcatcatgatggatcattagcagcatcttgtggaaaagatgctctggctcgt
gtatgggaccttcgaactaagagaagtcttctagcactagaaggtcatgtcaaaccaatt
cgcggcatcagtttttctcctaatggatatcatttagccactggtggtgaagataacact
tgtcgcatttgggacttgaggaaaaataaatccttgtacaccattgccgctcactctaaa
ttaatatcgcaagtcaaatttgagccacaggagggttactttttggtaactacctcatct
gacatgacagccaaggtttggtcaggccgggactttaagcatgtgaagacactatcaggg
catgaagctatagttagttctgtggatgttcttggagatggtgggtatattgttacagtc
tcccatgatcgcactataaagctgtggtccagcggctctaccagtgagcatactatggat
gttgactaa
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