Medicago truncatula (barrel medic): 11434801
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Entry
11434801 CDS
T01716
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mtr03009
]
11434801
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
11434801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
NBCH_WD40
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_IP5PC_F
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_LRRK2
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_DCAF12
PEP5_VPS11_N
Beta-prop_WDR19_2nd
FAM193_C
LZ3wCH
Motif
Other DBs
NCBI-GeneID:
11434801
NCBI-ProteinID:
XP_003621550
UniProt:
Q2HSF1
LinkDB
All DBs
Position
7:complement(5616303..5621089)
Genome browser
AA seq
441 aa
AA seq
DB search
MVVVLASSTDASGGIGCWDLNTGSEQIRYKSFSSPSHGLVSVGDRFLASSQLRDASTSSA
SVFFWSWSKPQVEVKSFPSEPITPLASNHSGTYLVGGGLSGEIYLWEVETGRLLKKWHGH
NTAVTCLVFSEDDSLLISGFKNGSVRVWSLLMIFDDVRRREASKIYEYSFSDHTLCVNDV
VIGYGGCNAIIASASDDRTCKVWTLSNGMLQRNIVFPSKIKAIALDPAEHVLYAGSEDGK
IFVAALNTTRITTNDQVSYITGSFSNHSKAVTCLAYSAAENFLISGSDDGIVRVWNASTH
NIIRVFKHAKGPITNILVLRQENDLSNPMSSNLQGTSKKKGAQFPPLEKYANSMDEDSDK
TTIVSLGGGNICMDVSYLSSQVISSYSKELQSQGSAAASEMEIEKLKRDCQKSVQMVNKW
KKMYENLHQFCVKEMLDGNEK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggtggttgttttggcttcatccacggatgctagtggtgggattggatgctgggacctt
aacacaggttctgagcagatccgctacaaatcattttcttccccttctcatggacttgtc
tctgttggtgatcgtttccttgcatcttctcagcttcgagatgcatcaacttcctctgct
tccgttttcttctggtcctggtccaagcctcaagttgaagttaagagctttccttctgaa
cctatcacgcctcttgcttctaatcacagtggcacttatctagttggtggaggtttgtct
ggtgaaatatacttgtgggaggttgaaaccggcagattgcttaagaagtggcatggtcat
aatacggctgttacttgcctggtattttctgaagatgactcacttctaatatctggtttt
aaaaatggaagcgtacgagtttggtctctcttaatgatatttgatgatgtgagaagacgg
gaagcaagcaagatttatgagtatagtttttcagaccacactttgtgtgtaaatgatgtt
gtgatcggttatggaggatgcaatgcaattatagcttcagcgtcagatgatcggacgtgt
aaggtatggaccttatctaatggaatgctacaaagaaatatagtgttcccttcaaaaatt
aaagccattgcattggatcctgctgaacatgttctctatgctggcagtgaagatggaaaa
atatttgtcgctgcacttaacaccacaagaatcactactaatgatcaagtttcatatatc
actggttcattttctaaccacagcaaggcagttacttgcttagcatatagtgccgccgag
aattttttaatatctggatctgatgatggaattgttcgagtttggaatgccagtactcat
aacatcatccgtgtctttaaacatgctaaaggaccaataactaatattcttgttcttaga
caagaaaatgacttgagtaatcccatgtcctctaatttacaaggaacctcaaaaaagaag
ggagctcaatttcctcctctggaaaagtatgcgaattcaatggatgaagactcagataaa
acgactattgtcagtcttggtggtggcaatatatgcatggatgtttcataccttagttct
caagtgatttctagttacagtaaagaacttcagagtcaaggttcagctgctgcttctgaa
atggagatagagaaactaaagcgtgattgccaaaagtcggtacaaatggttaacaaatgg
aaaaaaatgtatgaaaacttgcatcaattttgtgtaaaggagatgctagatggaaatgag
aaataa
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