KEGG   Medicago truncatula (barrel medic): 11435521
Entry
11435521          CDS       T01716                                 
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03420  Nucleotide excision repair
mtr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    11435521
  09124 Replication and repair
   03420 Nucleotide excision repair
    11435521
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mtr04121]
    11435521
   03400 DNA repair and recombination proteins [BR:mtr03400]
    11435521
Ubiquitin system [BR:mtr04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     11435521
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      11435521
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      11435521
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 11435521
NCBI-ProteinID: XP_003630019
UniProt: G7L9M1
LinkDB
Position
8:complement(41221315..41232771)
AA seq 1089 aa
MSIWNYVVTAHKPTNVTHSCVGNFTSPQDLNLILAKCTRIEIHLLTAQGLQSILDVPLYG
RIATLELFRPHGETQDFLFIATERYKFCVLQWDTEKSELVTRSMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNSLDNGADLLIPVPPPLCGVLIIGEETIVYC
SANGFKAIPIRAAITKAYGRVDPDGSRYLLGDHTGLLSLLVITHEKEKVTGLKIEPLGET
SIASTISYLDNAFVYIGSSYGDSQLIKLNLQPDPKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS
FISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVHNQLVQVTSNSVRLVSSSTRELL
NEWHAPSDYSVNVATANATQVLLATGGGHLVYLEIGDGILQEVKHAQLEYEISCLDINPI
GENPNQSQLAAVGMWTDISVRLFSLPELNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFMLNTSTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICH
QEQTRTFAICSLKYNSASAEESEMHFVRLLDDQTFDFISVYPLDTYEYGCFIISCSFSDD
NNVYYCVGTAYVLPEENEPTKGRILVFSVEEGKLQLVAEKETKGAVYCLNAFNGKLLAAI
NQKIQLYKWVLREDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
AIEERARDYNANWMSAVEILDDDVYLGAENSFNLFTVRKNSEGATDEERGRLEVAGEYHL
GEFINRFRHGSLVMRLPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKV
IKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESFLDLKRSKMDEISKAMEVSVEELAK
RVEELTRLH
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgagtatatggaactacgttgttaccgctcacaaacctaccaacgttactcactcctgc
gtcggcaatttcaccagtcctcaggacctcaatctcattctcgcgaaatgtactcgtatc
gagattcacttgcttactgctcagggcttgcagtctattttggatgtgccgttatatgga
agaattgctacgcttgaactatttcgccctcatggcgaaacacaggattttctgttcatt
gctaccgaaagatacaagttttgtgttcttcaatgggataccgagaaatccgagcttgtt
acacgatcgatgggggatgtttctgatcgtataggaagaccaacggataatggtcagatt
ggtattatagatcctgattgtaggttgattggactccacttgtatgatggtttatttaag
gttattccctttgacaataaaggacaactcaaggaagcttttaatatcaggcttgaggag
ctccaagttttggacataaaatttctgtatggttgtccaaagccaactatcgtggttctt
taccaggataacaaagatgcccgtcatgttaaaacatatgaggttgctctgaaggataaa
gattttgttgagggcccatggtcacaaaacagtcttgataatggggctgatttattgata
ccggttcccccaccactttgtggtgtgcttattattggagaagaaaccatagtatactgc
agtgctaatggttttaaagctattccaatcagagctgcaattacaaaagcctatggaaga
gttgatcccgatggttctagatatttacttggtgaccatacagggttgcttagtctactt
gtaataacccacgagaaagaaaaggttaccggtctcaaaatagagccacttggggagact
tccattgcatctacgatttcataccttgataatgcatttgtgtatattggttcaagctac
ggagattcacagctcattaaactaaatcttcagcctgatccaaaaggttcttatgtggaa
gtcttggaaaggtatgtcaatttggggcccattgttgacttctgtgtggtagaccttgaa
aggcaaggccaaggtcaggttgtgacttgctctggagcttacaaggatggttccctacgc
gttgttcgtaatggaataggtatcaatgaacaggcatcagtagaacttcaaggtatcaaa
ggaatgtggtcactaagatcctcaacagatgatccttttgacactttcctggttgtaagt
tttataagtgaaacaagaatattagcaatgaatctcgaggatgagctggaagaaactgag
attgagggattctgttctcaagtacagacattattttgccatgatgcagttcacaatcaa
cttgtacaagtcacttcgaactctgtaagactagtcagttcctcaaccagagagctcctg
aatgagtggcatgcaccgtcagactattcagtaaatgtagctactgccaatgcaacccag
gttttgttggctacaggtggtggtcacttggtttaccttgaaattggagatggtatatta
caggaagtaaagcatgcccaactggagtatgaaatctcatgcctagacattaatcccatt
ggtgaaaatcccaatcagagtcagctagctgcagttggaatgtggactgacataagtgtt
agacttttttctcttcctgaacttaatctcatcacaaaggagcatttaggaggagagata
atacctcgatctgttcttctttgtgcgtttgaagggatatcttacttgctatgtgccctt
ggtgatggccatctcttaaactttatgttgaacacaagcacgggtgagttaacagatagg
aaaaaggtctctcttgggacacaacctattactctacggactttctcatccaagaatact
acccatgtatttgctgcatctgaccggccaactgtgatttatagtagtaacaaaaaacta
ctttatagtaatgttaatctgaaggaagtgagtcacatgtgccctttcaactctgctgct
tttcccgacagtttagcgattgcaaaagaaggtgagcttactattggcaccattgatgac
atacaaaaacttcacattcgcactattccattgggggagcatgcacgacggatatgccat
caggagcaaactaggacatttgctatttgtagtttgaagtataactcagcaagtgctgaa
gaatctgaaatgcattttgtccgcttgctcgatgaccagacttttgacttcatatcagtt
tatccacttgacacctatgaatatggttgctttataattagctgctccttctcagatgat
aataacgtgtattactgtgttggaactgcatatgtattgcctgaggaaaatgaaccaacc
aagggaaggattctcgttttttctgttgaagaggggaagctacagttagttgccgagaaa
gagacaaaaggagctgtttactgcttgaacgcgtttaatggtaaattgctcgctgctatt
aatcaaaagattcagctgtacaagtgggtgctccgggaagacggtactcgtgaattacag
tctgaatgtggacaccacgggcacatactggctttatatgtgcaaactagaggagatttt
attgtagtcggtgatctgatgaagtccatctccttgttaatctataagcatgaggaaggt
gctattgaggagagagctcgagactataatgcaaattggatgtcagctgttgaaatcctc
gatgatgatgtataccttggtgcagaaaacagtttcaatctcttcactgttcgaaaaaat
agcgaaggcgccactgatgaagaacggggtcgtcttgaagtggctggtgagtatcacctt
ggagagtttatcaatcggtttcggcatggctctcttgttatgcgcttgccagattctgac
gtaggccagattccaactgttatatttggcaccattaatggtgttattggggtaatcgcc
tctcttcctcatgagcagtatgtattcttagagaagcttcagtcaaacttgaggaaggtg
attaaaggcgttggaggactcagccacgagcagtggagatcatttaataatgagaagaaa
actgtagaagccagaaactttttggatggggatttaattgagtcatttcttgatctcaaa
cgcagtaagatggatgagatttccaaggcaatggaagtttctgttgaagagttagccaag
agagtagaagagttgactaggctgcactga

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