Medicago truncatula (barrel medic): 11435676
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Entry
11435676 CDS
T01716
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03440
Homologous recombination
mtr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
11435676
03450 Non-homologous end-joining
11435676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtr03032
]
11435676
03400 DNA repair and recombination proteins [BR:
mtr03400
]
11435676
DNA replication proteins [BR:
mtr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
11435676
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
11435676
BRCA1-C complex
11435676
NHEJ (non-homologous end-joining)
MRX complex
11435676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
AAA_15
SbcC_Walker_B
Rad50_zn_hook
ATG17_like
AAA_29
ABC_tran
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
11435676
NCBI-ProteinID:
XP_024635093
LinkDB
All DBs
Position
3:41500263..41514618
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGRDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHSGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYTLRENITHDQEKAESLKD
QIQQLDGSIKDLDAKIDHVDKTLKHLLELKGQISSKTTERSTLFRSQQKQYSDLEEEFEE
PDEELMESKTKFDEKIANSQTQISKLDREKSDINTKFPVLKKTIDNSIWEISKLQTEAEA
HMSLRSERDSCIKNIFDRYNLGSLPKPPFSAEDALNLTNRVKSRLGDLEKDLEDKKNANN
TELKMAWDCYLNANESWQNTEAKIQTKREHKAGIIKRIEEKKNELESFELEISNIDVSHL
DERERELQIRLEGKIKQRDEREFELKKSEIENKALNVEQKIRALNREMLTMATDSKEREK
LSLMKGDLETKKKQHKKIIDDQKDKIRRVLKGRIPSDKDLKKEITQALRTVVAEFDDLNA
KYREADKEVNVLQMKVQEADNNLSKHQKDMSSRKKFIESKLQSLDQQGSGIDSYLKVLES
AKEKRDVQKSKYNIADGMRQMFDPFERVARAHHFCPCCERSFSAEEEDSFVKKQRGKAAS
SAEHLKILAVESSSADSDYQQLEKLRIWYEEYVKLSKETIPNAEKELQQVKEELDHKSQA
LDDVLGILAQVKTDKELVEPVVKYVEHADRIFLEIQTLQKKVEDLESELGCGGPEVRTLE
EIQLELVALQGTKDNLHTELTNLMDEQRNMDTDISGIQSRLQNARADKMNAAMKLQDVKR
LEEELERLTEEMTQVDLDEKSLTEAFGPLSKRKDKIRADYNELKLRLDHEFENLVEKKRI
YQQEAEAVFGMTSKIKEYSNSKKGDRLKELQEKKSLLESQLQSCETRMQEIIDELDKRKD
LLRNTDLLRRKIEDNLNYRKTKAEVDELEHEIEILEENMLKIGVSDTIQTEHQKLSQDRQ
RLLSESNRCKGTIDVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDCISIHSDSEGGGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAAIL
RIMEDRKSQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtcgacaagatgctgatcaaaggcatccgaagtttcgacccggaaaacaag
aacgtcatcaccttcttcaaacccttaaccctaatcgtcggtcccaacggtgccggcaaa
accacgatcattgaatgcttgaagctttcttgcaccggtgagttacctcctaatgctagg
tctggtcacagcttcattcacgaccccaaggttgcgggagaaaccgaaaccaagggacag
attaagctccggttcaaaaccgctgccggtagagacgtggtttgcataaggtcatttcaa
ctcactcaaaaagcatctaagatggaatacaaagcaattgagagtgtgcttcaaactatt
aatcctcattccggcgagaaagtttgccttagctatagatgtgctgacatggatcgagag
attcctgcactcatgggtgtttcgaaggccattttggaaaatgttatattcgttcatcaa
gatgaagcaaattggccacttcaagatccttccacgttaaagaagaagtttgatgacatc
ttttccgcaactcgatacacaaaggcacttgaggttataaagaaacttcacaaggatcaa
gctcaagagataaagacttacaagctgaaactggaaaatcttcaaactctgaaagatgcg
gcttacacgcttcgggaaaacatcacacatgatcaagagaaagcagaatctctaaaagat
cagatacagcagttggatggaagcattaaagatttggacgctaaaattgatcatgtggat
aaaacattgaaacatttgctggagctaaaggggcaaatatcaagtaaaactacagaacga
agcactctatttaggtcacaacagaagcaatattctgaccttgaggaggagtttgaagaa
cctgatgaggagttgatggaatcgaagaccaagtttgatgaaaagattgcaaattcacaa
acacaaataagcaagttggatagagagaagtctgacattaacacaaaatttcctgtcctt
aagaagaccatcgataactccatctgggagatcagcaagctacaaactgaagcagaagct
cacatgtctctgaggagtgaacgagatagttgcattaaaaatatttttgataggtataac
ttgggatctcttccaaagccacccttcagtgctgaggatgctttgaacctcactaatcgt
gtaaaatcaaggttgggggatcttgagaaggatcttgaagataaaaagaatgcaaataac
actgaactcaagatggcatgggattgctacttaaatgcaaatgaaagttggcaaaatact
gaagctaaaatacaaactaagagagagcacaaggctggcattataaagcgcattgaagag
aagaaaaatgagcttgagtcattcgaacttgaaatatctaatatagatgtttctcattta
gacgagagagaaagagaattgcaaattcgtctggaggggaagatcaaacaacgtgatgaa
agagaatttgaactaaagaaaagtgaaatcgaaaataaagcccttaatgtggagcaaaag
attagagctctcaatcgagagatgcttacaatggctactgattcaaaggaaagagaaaaa
ttatctcttatgaagggagacttggagacaaagaagaagcaacataaaaagataattgat
gaccaaaaagataaaataagaagggtgctaaaagggaggattccttctgataaggacctg
aagaaggaaatcacacaagcattaaggactgttgtagctgagtttgatgatctgaatgct
aagtatcgagaagctgacaaggaagtaaatgttttgcagatgaaagtacaagaagcagac
aataacttatctaaacaccaaaaggatatgtcatcaagaaagaaatttatcgaatccaag
cttcagtctttggaccagcaaggctctggaatcgattcttatctaaaagttttagagtct
gccaaggagaaaagagatgtacagaaaagcaaatataacattgcagatggtatgcgacaa
atgtttgatccttttgaaagggttgcaagagcacatcatttttgcccttgctgtgagcgt
tctttctcggcagaagaagaagacagttttgtcaagaagcaaagagggaaggctgctagt
tcagctgaacatttgaaaattcttgctgtggagtcctcaagtgcagactctgattatcag
cagttggagaagcttcgtatatggtatgaagaatatgttaaacttagcaaggagacaatc
cccaatgctgaaaaggaactccagcaagtcaaggaagagctggatcacaaatcccaggca
cttgacgatgttttaggtattttagctcaagtgaagactgacaaggagttggttgagccg
gtggtgaaatatgttgaacatgctgatcgaattttcctcgaaattcaaactttgcaaaag
aaagttgaggatttagaaagtgagcttggttgtggaggaccagaagtgaggactctagaa
gaaattcaattggagctcgttgcattgcagggaacaaaggacaatttgcatactgagttg
acgaatttgatggatgagcagaggaatatggatactgatatatcaggtattcaatcacgg
ttgcagaatgcaagggctgataaaatgaatgcagctatgaaattgcaagatgtaaaaaga
ttagaagaagaattagaacgattgacagaagaaatgacccaagttgatcttgatgagaag
agtctcacggaagcctttggacctttatccaagcgcaaagataaaatacgtgctgactat
aatgaattgaaacttagacttgaccacgagtttgagaatctggttgaaaaaaaaagaatt
tatcagcaagaagctgaagcagtttttggaatgacttctaagatcaaagagtactctaac
tcaaagaaaggagacaggttgaaggagctgcaggaaaagaaatctctattagaatctcaa
ctgcaaagttgtgaaaccaggatgcaggaaattatagatgaactagacaaaaggaaagat
ttgttgcgaaatactgatttgcttagaagaaaaattgaggacaatttaaattacagaaaa
acaaaggctgaagtagatgagcttgaacatgaaattgaaatacttgaagaaaatatgttg
aagattggtgtatctgacacaattcaaaccgaacaccagaaattatcccaggacaggcag
aggcttctttcggagtcaaacaggtgcaaaggaacaatagatgtttaccaaagcaatatt
tccaaaaataagattgatcttaagcaggcccaatacaaggacatagataagcgatatttt
gatcagcttatccagcttaagacaactgaaatggcaaacaaagacctggacagatactac
aatgcacttgacaaagcactgatgcgattccacacaatgaaaatggaagaaatcaacaaa
attataagagaattgtggcaacagacttatagaggacaggatattgactgcattagtatt
cattctgattccgaaggtggtggtacccgatcctacagttacaaggttctcatgcagact
ggtgatgctgagttagaaatgagaggaagatgtagtgcaggacagaaggtactggcatct
ctcatcatacggttggctttagcggaaacgttttgcctcaattgtggaattcttgcattg
gatgagccaaccacaaatttggatggtccaaatgctgaaagtctggctgcggctatcctg
aggatcatggaggacaggaaaagccaggaaaattttcagctaattgtaattactcatgac
gagcgttttgctcaactgattggtcagcgccagcatgcggagagatattatcgagtcgca
aaagatgaccatcagcacagtataatcgaatctcaggagatattcgactga
DBGET
integrated database retrieval system
