Medicago truncatula (barrel medic): 11438450
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Entry
11438450 CDS
T01716
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11438450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11438450
03016 Transfer RNA biogenesis [BR:
mtr03016
]
11438450
Enzymes [BR:
mtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
11438450
Messenger RNA biogenesis [BR:
mtr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
11438450
Transfer RNA biogenesis [BR:
mtr03016
]
Prokaryotic type
tRNA degradation factors
11438450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
11438450
NCBI-ProteinID:
XP_003624712
UniProt:
G7L1J6
LinkDB
All DBs
Position
7:complement(40411885..40433504)
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AA seq
926 aa
AA seq
DB search
MLACPSTTFHCPTTFHRHSHPSKLLLSKSKPLIFPPRSSFAAFGKLKLSSIFSGKNCRRF
NVKASIDSSSELLESADGGSSHIAPHSVKIPVGDRYILVETGHMGRQASGSVTVTDGETI
VYTTVCLDDIPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPL
RPTMPKGFYHETQILSWVLSYDGLHIPDSLAVTAAGIALALSEVPTSKAVAGVRVGLVGD
KYIVNPTSEEMENSELDLMLAGTDSAILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEV
EALVKKCGKPKMVDAIKLPPPELYKHVEEIAGDELVKVLQIRNKIPRRKALSSLEEKVLK
ILSENGFVTNDTAPRNNAETIAEILEDEDEDEEVIVDGEVDEGDVHIKPTPRKPTRLFSE
VDVKLVFKDVTSKFLRKRIVEGGKRSDGRTPNEIRPINSSCGLLPRAHGSALFTRGETQS
LAVATLGDNKMAQRIDNLMDVDDYKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAER
SLETILPSDKDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKSSIAGIAMGLV
LDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLAIMREAL
LQAKDGRKHILGEMMKCLPPPAKRLSKYAPLIHVMKVRPDKINLIIGSGGKKVKSIIEQS
GIEAIDTEDNGTVKIFARDLASLEMSKAIISNLTMVPTIGDIYRNCEIKSIVPYGAFVEI
APGREGLCHISELSSAWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSHRALLPDADPDNS
NSTDKGSLEEVISLTNAGLVEEKTEQNAKVNTRKGRTSSKRSSEDNSALPSKKFIRRSSE
DKPVTNKDKIKKSDNKDESSLVSEEA
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgctagcatgtcctagcaccaccttccattgtcctaccacattccaccgccattctcat
ccttcgaagttgctactctccaagtccaagcctctcatcttccctccccgttctagcttc
gcagcgtttgggaaattgaagctcagttcgattttttccggtaagaattgtcgccggttc
aatgtcaaagcttcaattgattcgtcatcggagcttttggagtcggctgacggcggtagc
tcgcacattgccccgcattccgtcaagattcccgttggtgaccgatatattttggttgag
actggtcatatgggaaggcaagcaagtggttctgttacagttacggatggagagaccatt
gtgtacaccactgtttgtttggatgatattcctagtgagccatccgattttttccccctt
tctgtgaattatcaagaacgcttttctgccgctggtcgcactagtggaggtttttttaaa
cgagaaggaaagacaaaggatcacgaggttcttatttgtagattgattgataggcctctg
cgtcctactatgcctaagggcttctaccatgaaactcaaatattgtcttgggttttaagt
tatgatggattgcatatccctgattccttggctgtcactgcagctggtatagcacttgca
ctttcagaagtgcccacgtcaaaagcagttgctggagttcgagttggccttgttggcgac
aagtatatagtaaatcctacttctgaggagatggaaaactctgagttggacctcatgctg
gctggcacggatagtgcaatattgatgatagagggttatggcaattttctcccagaagag
aagctacttaaagctgtagaagttggtcaggatgcagtgcgagcaatctgtaatgaggta
gaagccttggttaagaaatgtgggaagccaaaaatggttgatgccatcaagttgcctcct
cctgagctttataaacatgttgaggaaatcgctggtgatgagttggtcaaagttcttcaa
attagaaacaaaataccaagaaggaaagccctttcatcattagaagaaaaggttcttaag
atactttcagagaatgggtttgtcacaaatgatactgcaccaaggaataatgctgaaacc
atcgcagagattcttgaggacgaggatgaagatgaagaagtaattgttgatggtgaagtt
gatgaaggtgatgttcatataaagccaaccccacggaaaccaacgcgtttattttctgag
gtagatgtgaagttggtatttaaagatgttacatccaagtttttgaggaaacgtatagta
gagggtgggaaaaggagcgatgggagaaccccaaatgaaatccgtccaattaactcaagc
tgtggcttattacctagagcacatggaagtgctctttttacgaggggcgagacacagtcg
ctagctgttgctacgcttggagataacaagatggcacaacgaatagacaatcttatggat
gttgatgattacaagaggttctatctgcagtattcctttcctccttcatgtgttggggag
gttggccggattggtgcaccgagtagaagagaaattggtcacgggatgcttgctgagaga
tcccttgaaacaattttgccttctgataaagatttcccttacactattcgtgttgagagt
actatcacagaaagcaatggctcttcgagcatggcatctgtttgtggaggttgcttagca
ttgcaagatgctggggttcctatcaagtcctcgattgccggaattgcaatgggtttggtt
cttgataccaaggaatttggtggagatggaactccgcttattctttccgacataactgga
tctgaagatgcatctggagatatggactttaaggttgctgggaatgaagatggtataact
gcatttcagatggacattaaggtgggaggaattactttggccatcatgagagaagcactg
ctacaggcaaaagacggaaggaaacatatactcggagagatgatgaaatgcttgcctcct
ccagcaaaaaggctttccaagtatgctcctctgattcacgttatgaaggtcagaccggat
aaaataaatcttataattggttccggcgggaaaaaagtgaagagcattattgagcaatct
ggaatagaggctattgatactgaagataatggcactgtgaaaatatttgcgagagatttg
gctagtttagagatgtctaaggctatcattagtaatttgacaatggttccaactattggt
gatatatataggaactgtgaaatcaaatcaatagttccatatggagcgtttgtagagata
gcacccggacgagagggactttgccacattagtgaactgagttcagcttggctagctaag
gcagaagatgctttcaaggtgggagatcgtattgatgtaaaacttatagagataaatgac
aagggacaactccgtcttagtcaccgagcactgcttcctgatgcagatccagataattca
aattcaactgataagggttcattggaagaagttatcagcctgacgaatgctggtttagtt
gaagagaaaactgaacagaatgctaaggttaacactcgtaaaggcagaacctcatcgaaa
aggagttcagaggataattctgcacttccatcaaaaaagtttatcaggagatcttccgag
gataagcctgtcacgaacaaagacaagataaagaagagcgacaacaaagatgaaagtagt
ttggttagtgaagaggcataa
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