Medicago truncatula (barrel medic): 11439404
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Entry
11439404 CDS
T01716
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mtr04131
]
11439404
Membrane trafficking [BR:
mtr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
11439404
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RIC1_2nd
RIC1
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_EML_2
Beta-prop_VPS8
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_WDR3_1st
Motif
Other DBs
NCBI-GeneID:
11439404
NCBI-ProteinID:
XP_003624005
UniProt:
Q2HUD0
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All DBs
Position
7:36322362..36334066
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AA seq
1123 aa
AA seq
DB search
MYMAYGWPQVIPLDQGLSPSEHKVVYFKLINRLLLIVSPTHFELWSSSQHRVRLGKYKRD
SDSLQREGENLQAVWSPDAKLIAILTSSFYLHIFKVQFLDKKIYIGGKQPSALCLATISL
LLSEQVPFAEKDLSVSNIVCDNKHMLLGLSDGTLYSMSWKGEFYGAFQFESHPPASFDDS
QLPHPLENGLSPKGLPKVPTLNHILPRNSEIKHLELCLSLRLLFVLYSDGQLVSCSISKK
GLKQVDCIKAEKRLACGDAVCASAALEQEILAVGTRRGTVELYDLAESTSLIRTVSLYDW
GFSMDDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPIAKP
NHDCKYEPLMGGTSLMQWDEHGYRLYAIEERSSERIISFSFGKCCLSRGVSGTTYTRQVI
YGEDRLLIVQSEEIDELKMLHLKLPVSYISQNWPVQYVAASQDGMYLAVAGLHGLILYDI
RMKRWRVFGDVTQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK
PLFAKPIVMDVYQDYILVTYRPFDVHIFHVKLFGELTPSGNPDLQLSAVRELSIMTAKSH
PAAMRFIPDQLPRELISKNYISSSSDSSTAEPARCLILRSNGELSLLDLDDGRERNLTDS
VELFWVTCGQSEDKTNLIEEVSWLDYGHRGMQVWYPSPGPNSFKQEDFLQLDPELEFDRE
VYPLGLLPNAGVVVGVSQRMSFPSSAEFPCFEPSPQAQTILHCLLRHLLQRDKIEEALRL
AELSAEKPHFSHCLEWLLFTVFEADISRPNVNKNQVSVLKYAKTLLEKTCDLIRNFPEYL
DVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYC
ALRLLQATLVDSLYELAGELVRFLLRSGREYDQASSADSDKLSPRFLGYFLFRSAERKQA
LDKSTSFKEQSAHVTSVKNILENHASYLMAGKELSKLVAFVKGTQFDLVEYLQRERYGSA
RLENFASGLELISQKLQMETLQSRLDADFLLAHMCSVKFKEWIVVLATLLRRSEVLFDLF
RHDFRLWKAYSSTLQSHPAFIEYQDLLEDLEDKLSSVANEEEK
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcatatggatggcctcaggtcattcctctagaccaaggactgtctccttct
gagcacaaggttgtttatttcaaactcatcaatcgtttgttgttaattgtttcccctact
cactttgaactttggagctcttcccagcatagagtgagattggggaagtacaagagagat
tcagattcattgcagagagaaggagaaaacttgcaggctgtgtggagtcctgatgctaaa
ttaattgctattcttacatcttctttctatcttcacattttcaaggtccaatttttggat
aaaaaaatatacattggtgggaaacaaccttctgctttgtgcctagctaccatatctctt
cttctttctgagcaagttccttttgcagaaaaggatttgtcagtgagcaatattgtttgt
gataacaaacatatgctgcttggactttccgatggaactttgtacagtatgtcttggaag
ggggagttctatggagcttttcaattcgaatcacatcctcctgctagctttgacgattct
caattaccacatccattagagaatggtctttctcctaaaggcctcccaaaggttcctacg
ctcaatcacattcttcccagaaattctgaaatcaagcatctagaactctgcctttcactg
aggttgctatttgtcttgtactctgatgggcaacttgtgtcatgttccattagtaagaaa
gggttaaagcaagttgactgtattaaagcagaaaagagattggcttgtggagatgctgta
tgcgcttcagcagctcttgagcaggaaattcttgccgtcggtaccagaagaggaacagtg
gagttgtatgatttggctgaatcaacatcgcttattcgcacagtttctttgtatgactgg
ggattttcgatggatgacactggccctgttagttgcattgcatggacacctgataattct
gcttttgccgttgggtggaagttaagggggcttacagtttggtctgtttctgggtgtcgc
ttgatgtcaacaatccgtcaaataggtttaagttctgtatcttctccaattgctaagcca
aaccatgattgtaagtatgagccattaatgggtggcacctcactgatgcaatgggatgaa
catggatatagactttatgctattgaggagagatcttcagagagaattatttcattctct
tttggaaaatgctgtcttagcagaggtgtttctggcactacatacacccgacaagtgatt
tatggcgaagacaggttgctcatcgtgcagtcggaagagattgacgagcttaaaatgctg
catcttaagcttccagtttcttatatttcccaaaactggcctgttcaatatgtggcagct
agtcaggatggaatgtacttggcggttgctggtcttcatggtttgatattgtatgatata
cgaatgaaaagatggagagtctttggagatgttacccaggaacaaaagattcagtgtaag
ggcttgctatggctgggaaagattgtcgttgtctgcaactatattgattcttccaacacg
tatgaattgctcttttacccaagatatcaccttgatcaaagctcattgctctgtcgaaaa
ccattgtttgcgaaaccaattgtgatggatgtgtaccaagattatatacttgttacgtat
agaccatttgatgtccatatattccatgtgaaattatttggtgaattaactccttcagga
aatcctgatttacagctttctgcagtacgagaactttcaattatgactgccaagagccat
cctgctgcaatgcgattcattcctgatcaactcccaagagaactgatttcaaaaaattac
atttcatcttcatcagattcatcaacagcagaaccagccagatgtttgatattgaggtca
aatggggagctttcgcttcttgatttggatgatggacgggagagaaatcttactgattca
gttgagcttttttgggtcacctgtggccagtctgaggataaaacaaatttaattgaggaa
gtttcatggttagattatggccatcggggtatgcaggtttggtatccatctccaggtccc
aattcttttaagcaggaggatttcttgcagttggatccagaactagagtttgatcgtgaa
gtataccctctgggacttcttccgaatgccggtgtagttgttggtgtttcccagagaatg
tcatttccatcaagtgcagaattcccatgttttgagccatctcctcaagcacaaactata
ctgcactgcctactgcgccatcttcttcagagggacaaaattgaggaagctttaaggctg
gcagaactatcagcagaaaaacctcatttttctcattgtctagagtggcttctttttaca
gtatttgaagcagatatatccaggccaaatgtaaacaagaaccaggtttcagttcttaaa
tatgcaaaaactcttttggagaagacctgtgatcttatccgaaattttccagagtaccta
gatgttgttgtcagtgttgcaagaaaaacagatggtcgtcattgggcagatttgttctct
gctgctggaagatcaacagaattgtttgaggaatgttttcaacgtagatggtaccgcact
gcagcttgctatatacttgtaattgccaaacttgagggtcctgctgtgagccagtactgt
gctttacggttattacaggcaacactcgttgattcattatacgagcttgctggggagctg
gtgaggttcttactaagatctggtagggagtatgaccaagcatcatcagccgattcagat
aaactgtctcctcgatttttaggctattttctttttcgttctgctgagcgaaagcaagca
ttggataaaagcacctcattcaaggaacaaagtgctcatgtcacctcagttaagaatatt
ttagaaaaccatgctagttacttgatggctgggaaagagctctccaagcttgttgcattt
gtaaaaggcactcagtttgatttagtggaatacctacaacgtgaaaggtatggaagtgct
cggctggagaattttgcttccgggctcgaactaataagccaaaagcttcaaatggaaaca
ttacagagccgattggatgcggactttctcctggctcatatgtgctctgtcaaatttaag
gaatggatagttgtcctggctactctcttgagacgttccgaggtcctttttgacttattc
cgccatgattttcggttatggaaagcctacagcagcaccctgcagtcacacccagcattc
attgaatatcaagatttattggaagacctggaagataaactttcatctgttgcaaatgag
gaagaaaaatga
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