Medicago truncatula (barrel medic): 11440395
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Entry
11440395 CDS
T01716
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Module
mtr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
11440395
Enzymes [BR:
mtr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
11440395
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
DUF3737
NosD
Fn3_VIN3
Motif
Other DBs
NCBI-GeneID:
11440395
NCBI-ProteinID:
XP_024636446
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Position
4:complement(40477851..40480299)
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AA seq
400 aa
AA seq
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MCKLNNLLPFVLIIITLSCYLNSSTAKAASSSSTYNVINYGAKPDGKTDSTKAFGNVWAK
ACSSPYPASIYVPQGKFLLGTATFSGKCINKAISITIDGTLVASSNYRVTGKNGNWLKFQ
HVDGVSIRGGLLDGQGTALWDCKNSDKSNCPIGATTLEFSNSKNIMISGLTSMNSQMFHI
VFNGCENVKMQGVNIMAAGNSPNTDGIHVQMSSHVTIVNSKIRTGDDCISIGPGTSNLWI
ENIACGPGHGISIGSLGWKLNEPGVQNVTVKTVTFTGTQNGVRIKSWGRPSNGFVRNIFF
QDAIMVNVQNPIVIDQNYCPNNKGCPGQASGIKVSGVTYQNIHGTSATQVAVKFDCSSKY
PCSGIKMKDVKLTYKNQVAEASCNHAGGAALGSVQPESCL
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaaactaaacaatcttcttccttttgtcttaatcataatcacattatcttgttac
ttaaattcctcaaccgcaaaagcggcgtcgtcgtcgtcgacatacaatgtaataaactat
ggagccaaaccagatggtaaaactgattccacaaaggcatttggaaatgtatgggctaag
gcatgttcctcgccgtatccggcatcaatttacgtgccacaagggaaattcttacttgga
actgcaacatttagtggaaaatgtatcaataaagctatttccataaccattgatggcact
ttggtggcttcatctaattaccgtgtaaccggtaaaaatggtaattggttgaagtttcag
catgtcgacggggtttcgatccgcggcggtttgcttgatggacaaggtactgctttgtgg
gattgtaaaaattcggacaaaagtaattgtccaattggagccacgacgttggaatttagt
aactcaaaaaacattatgattagtggtttgacatcaatgaatagtcaaatgttccacata
gtgttcaatggatgcgaaaatgtaaaaatgcaaggtgtcaatatcatggcagccggaaac
agcccaaacaccgacggcatccacgtccaaatgtcctcccatgtcaccatcgtcaactcc
aaaattcgaaccggcgatgattgtatctcaattggccctggtacaagtaatttgtggatt
gaaaacattgcatgtggaccgggacatggaataagtattggaagtttaggatggaaattg
aatgaaccaggagtacaaaatgtgacagttaaaacagttacattcacaggaactcaaaat
ggtgttagaataaaatcttggggtagacctagcaatggatttgtgaggaacatctttttc
caagatgcaatcatggttaatgtccaaaacccaattgtaattgaccagaattattgccca
aacaacaaaggctgccccggtcaggcctctggaattaaagtgagtggtgtaacataccaa
aacattcatggaacatctgcaacacaagtagctgtgaaatttgactgtagttcaaagtat
ccatgcagtggaataaagatgaaggatgtaaagctcacttacaaaaatcaagtagctgaa
gcatcatgtaaccatgctggtggagctgccttgggttcagttcaaccagagagttgctta
tag
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