Medicago truncatula (barrel medic): 11441952
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Entry
11441952 CDS
T01716
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Module
mtr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
11441952
Enzymes [BR:
mtr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
11441952
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Motif
Pfam:
Glyco_hydro_28
GpP-like_1st
Motif
Other DBs
NCBI-GeneID:
11441952
NCBI-ProteinID:
XP_039688570
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All DBs
Position
4:13311494..13317065
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AA seq
410 aa
AA seq
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MASQMILRSKLQDPNRPTPNEFQNFLLLYLCFYFLLLSYLIKFVGFLFSITKVFLKVWND
ICKRDSDTPTLLVPSGKTFLLNPLKFRGPCSFSPVHFQLEGNIVAPSSSEAWKDEDYTKW
IVFYYIHGIIIDGGGQIDGQGSTWWKTNCSVTNCPRPTALHIDNCSNLQLNGTHHLNSAR
NHISIDYSDHVNIFKINITAPQESPNTDGIDIGHSSYVLIQDSTIATGDDCIAMNNGTSN
INITGVTCGPGHGISVGSLGENGAYEIVEQVYVKNCTFIRTENGMRIKTWPGGSGYARNI
SFEQIILTETKNPIIIDQNYRDLVIDKANNMQKSEVQISGVTYRDVIGTSNSKTSIKLNC
NKNSGCTDIFMDVVNITSISGKTTKASCKNAHGEASSTSPYVPCLSQDSD
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcctcacagatgattctcaggagcaaactccaagatcccaatagaccaaccccaaat
gagtttcaaaattttcttctgttatatttatgtttttactttttattattgtcgtattta
attaaatttgtgggttttttattttcaattacaaaggtttttctgaaagtttggaatgat
atttgcaagagagacagtgatactccaacacttttggttccatctggtaaaacttttttg
ttaaaccctctcaaatttagaggcccctgcagtttctctccagttcattttcagctcgaa
ggaaacattgttgcgccaagtagcagtgaagcatggaaggatgaagactataccaagtgg
attgtgttttattacattcatggcataatcatcgacggaggtggacaaatcgacggccag
ggttctacttggtggaaaacaaattgcagtgtgacaaactgtccacgaccaactgcacta
cacattgataattgtagcaatctccaactaaatgggactcaccatctcaatagtgcaaga
aatcacatatctatagattattcagatcatgtaaacatattcaagatcaatatcactgca
cctcaagagagcccaaacacagatggaattgatattggtcactcaagctacgttttaatt
caggactcaactattgcaacaggagacgattgcatagcaatgaacaatggtacatcaaat
attaacattacaggggtaacttgtggaccaggtcatggtataagtgtaggaagccttgga
gaaaatggagcttatgaaatagtggaacaagtatatgttaaaaattgcactttcattaga
acagaaaatggaatgagaataaagacatggccgggtggatctgggtatgcaagaaatatc
tcatttgaacaaatcatacttacagagacaaaaaatcctataattattgatcagaactat
agagatctagtgattgacaaagcaaacaatatgcagaaatcagaagtacaaataagtggt
gtaacttatcgtgatgttattggaacttctaatagcaaaacatcaattaaattgaattgc
aacaagaattcaggttgcacagatatcttcatggatgtagttaacataacctcaatttct
ggaaaaactacaaaagcttcttgcaaaaatgctcatggagaagcttcttctacttcacct
tatgtaccttgcttgtcgcaggatagtgattaa
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