Medicago truncatula (barrel medic): 11442475
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Entry
11442475 CDS
T01716
Name
(RefSeq) extensin isoform X1
KO
K13095
splicing factor 1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11442475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11442475
Spliceosome [BR:
mtr03041
]
Complex A
Other components
Complex A specific factors
11442475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
KH_1
SF1-HH
Motif
Other DBs
NCBI-GeneID:
11442475
NCBI-ProteinID:
XP_003601633
UniProt:
G7JA56
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Position
3:complement(41247964..41253265)
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AA seq
804 aa
AA seq
DB search
MTAKFDLTSASEPHKMSGATSTTPSSNQKLSKFGAKSGFVIPKNKLLGSLVPIIRGAKKD
GVTGVVNEESSKQIERKSRWGPDPTQDAFVRKAKVLALQIRVDQISKMLESENPEIVDTQ
NSPLEDENPGASKAGSQINSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDNVP
LPVQEYPGYKFVGLIYGTEGDNQKRLEKETGTKIKIHGTKADTGEKGEIKPGTDVQCGYQ
EMHVNISADSFDKVDAAISIIELLISSVTGNSAAGSTPSLSVSGDTTNVLNQNKDTTPSH
AISLSLENQAVFQPATNTQMQGDHFQYSGSWFSPLPSHTPLFASSGTVVPPNPQHLARAP
PFPSQTMSPSSLISAFGAQPPPVSGFHPFIPNQQFSMQAPPPTQILQHSQWPQTNPFGQV
GPPRNPSVIRAQNLSAPTNASLSFPVSLSQPTPTGQLQTSVSSTPQPLSGISPSPIANQP
LTPHGVSTGLGGGPVNVKMSVGLSNMGPMASPAVPPTRPVSLGPQPDVEYKSPQPNMLMI
PRPGSIHPHHAGMSPRPPFSLVPMPGTVHSTGNHLLGPVSFPSPRISSPLPLAQQSGIPT
SASQYSHVNPLASMPSNSGNFTFQGQRPNADYYQAVPRPNSQATTQGGTQEPPSGPRPPP
FRFAVPDQPLQSFQRTQVSNQLDPSQAYVSAAPFGGSSGSVSFPPRHPAFPYAGQPSPRS
QVPQMGMRNFIPAPQMQNLASPDVQRGMHNRQSYPAQGAWPLNQKFSNNPSLASGKPAHP
ADQIYDPFSPTSAAPPHLKGNPGK
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaaaattcgatttaacgtctgcttctgaacctcacaagatgtctggagctaca
tctacaacaccttctagtaaccaaaagctctctaaatttggtgccaaatctggatttgtt
atccccaaaaacaagttattaggatcattggtccccattatccgaggagctaaaaaagac
ggggtcactggagttgtcaatgaagaaagttcaaaacaaatcgagaggaaatcaagatgg
ggacctgatccaacacaggatgcatttgtcaggaaggctaaggttttggcattgcagatt
cgagtggaccaaatttcaaagatgttagaatcagaaaatccagagattgtagacactcag
aactcaccattggaggatgagaatccaggtgcaagcaaggctggttctcaaattaatagc
aagaagtcagaaatgctagaactcgaaaagcgggaagcaataggtgaaatactaaaatta
gatcccagttacaagcctccacctggttttaaaccattgttaaaagaagacaatgttcct
ttgcctgtccaagaatatcctgggtacaaatttgttggtcttatttatgggactgaaggt
gataatcagaagcgactggagaaggaaactggtaccaagataaaaattcatggaaccaaa
gcagacacaggagagaaaggtgaaattaaaccaggcactgatgtccagtgcggttaccaa
gagatgcatgtcaacatatcagctgatagttttgataaagtggatgcagcaatttccatc
attgaactactaatttcctctgtaacggggaattcagctgctggttccacaccttctcta
tctgtttctggggacacaactaatgttctgaatcaaaacaaagacaccactccttctcat
gcaatttctctttctctggaaaaccaggctgtgtttcaacctgcaaccaatacacaaatg
caaggagatcactttcaatactctggttcgtggttttcacccttaccatctcatacccct
ttatttgcttcttctggcactgtagttcccccaaatccacaacaccttgctagagcaccc
ccttttccatcacaaacaatgagcccttcaagtctgatttcagcttttggtgctcaacct
ccacctgtttctggattccacccgtttattcctaatcagcagttttctatgcaagcacca
ccaccgacacaaatcttacagcactcacaatggcctcaaacaaatccttttggtcaagtt
gggccaccaagaaatccttctgtaatacgtgcacagaatttgtcagcaccaacaaatgct
tcactttcatttccagtttctttaagccaaccaacaccaactggacaactccagacatca
gtctcttcaacgcctcaacctttgtctggtatatcgccgtcaccaatagctaaccagcca
ttaacccctcacggcgtatctactggactgggtggaggacccgtcaatgttaaaatgtct
gtaggtctcagcaatatggggccgatggcttcaccggcagttccccctacaagacctgtt
tctctcggtccacaaccagatgttgaatataagtcaccccagccaaatatgttgatgatt
ccacgacctggcagtattcatccacatcatgcaggaatgtcacctagaccaccattttct
ttggtaccaatgccaggaactgttcattcaactggaaaccatttattagggcctgtttca
tttccttcgccaagaatatcctctccacttccattagctcagcaatcaggaatacctact
tctgcctctcaatactcccacgtaaacccactggcctccatgccttcaaattcgggaaat
tttacctttcaaggacagaggcccaatgcagactactatcaagcggttcccagaccaaac
agtcaagctactactcagggtggtacacaagagccaccttccggtccacgcccgccacca
tttaggtttgctgtgcctgatcagcctcttcaaagctttcaaaggacacaagtctccaac
cagctggatccatctcaagcttatgtctctgccgctccttttgggggaagttcgggttct
gtctcatttccacccagacaccctgcattcccatatgctggtcaaccttcaccaagatct
caagtcccacaaatgggtatgaggaacttcattcctgcccctcaaatgcaaaatttggcc
agtcctgatgtccaaagaggtatgcacaatcgacaaagctatcctgctcagggagcatgg
cctctgaatcagaagtttagcaacaatccctccttggcgtccggtaagccagcacatcct
gcagaccaaatttatgatcctttttcacctacatctgctgcacctccacacctgaaaggt
aatcctggaaaatga
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