Medicago truncatula (barrel medic): 11443540
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Entry
11443540 CDS
T01716
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
11443540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11443540
03036 Chromosome and associated proteins [BR:
mtr03036
]
11443540
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
11443540
Coactivators
SAGA/TFTC/STAGA complex
11443540
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
11443540
STAGA complex
11443540
TFTC complex
11443540
SAGA complex
11443540
SLIK complex
11443540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
CCDC47
Motif
Other DBs
NCBI-GeneID:
11443540
NCBI-ProteinID:
XP_003600186
UniProt:
G7J040
LinkDB
All DBs
Position
3:24946545..24951874
Genome browser
AA seq
510 aa
AA seq
DB search
MSVIPKESIEVIAQTLGINNLSSDVALALSPDLEYRIREIMQESIKCMRHSMRTFLTTDD
FDTALALRNLEPIYGFASNDPPRFKKAAGHNDLFYIDDKDVDIKDLVEADLPKAPLDTSI
TSHWLAIEGVQPAIPENAPPEASTEIKNSEYKEDRLPVDIKLPVKHVITTELQLYYEKII
ELILNKSGSILFRRALVTLATDSGLHPLVPYFTRFVADEVARNLNNLNILFALMRLVRSL
LQNPHIHIELYLHQLMPPIITCIVAKRIGNRLSDNHWELRDFSANLVALICKRFGHMYHN
LQPRVTKTFLHTFLDPTKALPQHYGAIKGIAALGSRLVRLLILPNLEPYLHLLEPEKQLE
KQKNEIKRQEAWQVYGALLCAVGQNMHEKVKRFSSLLSPQSRATSSGNGKAMIAMPGVSG
VVAPMNSMSVDNMQGSTSGFPTMMGVSNSSVGMSSSMGRQLSNENNTSSSILAQAWKDDI
DAGQLLPPVFELFGESLLSFIPKPQAFIFL
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgattccaaaggaatcaattgaagtaattgcacaaacccttggcatcaacaat
ttatcttccgatgttgcccttgctctttcacccgatcttgaatatcgcattcgtgaaatt
atgcaggaatcaattaaatgtatgcgccattctatgagaacttttcttactactgatgat
tttgatactgcacttgcattgaggaatttagagccgatatatggtttcgcctctaacgat
cctcctcggttcaaaaaagctgctggacacaatgatttgttctacattgatgataaggat
gtggatattaaagatttggttgaagcagatttaccgaaagcaccccttgatacatcaatt
accagtcactggttggctattgaaggtgtgcaacctgcaattcccgaaaatgctccacct
gaagcttccactgagataaaaaattctgaatataaagaagataggcttcctgtggatatc
aaattacctgttaaacatgtaataacgacggagcttcagctttactacgaaaaaataatt
gagctgattttgaataaatctggctccattctttttagaagagcgttggttaccttggca
actgactcaggactccatcctttagttccttatttcacacgctttgttgctgatgaggtg
gcacggaatttaaataatttaaacatcttatttgccttgatgcgccttgtgcggagcctt
ttgcaaaatcctcacatacacatagaactttatttacaccaattgatgccgcctatcatt
acttgcattgttgcaaaaaggattggaaacagactgtctgataatcactgggagcttagg
gatttcagtgctaatcttgttgctttgatatgcaaaagatttgggcatatgtatcacaat
cttcagccacgtgtgacaaagacgtttcttcacactttcttggaccctacaaaagctctg
cctcaacattatggtgcaatcaaaggaatagcagctcttggatcaagactggttcgtttg
cttatacttccaaatctggagccatatttgcatctccttgagcccgaaaagcagcttgag
aagcaaaaaaatgaaataaaaaggcaagaagcatggcaagtatacggagccttgctgtgt
gcagtaggccaaaatatgcatgaaaaggtcaagagatttagtagtttgctttctcctcaa
agtcgtgctacttcaagtggcaatggaaaagccatgattgcaatgccaggtgttagtggg
gttgtggcaccaatgaattccatgtcagttgacaacatgcaagggtcaacaagtggattt
cccaccatgatgggagtttctaattcaagtgtcggcatgtcatcatcaatgggtcgtcaa
ttatccaacgaaaacaacacttcctcttccattctagctcaggcttggaaggatgacata
gatgcaggacaattgctacctccagtgtttgaattatttggcgaaagtttgttatcattt
ataccaaaacctcaagcatttatatttttgtaa
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