Medicago truncatula (barrel medic): 11444450
Help
Entry
11444450 CDS
T01716
Name
(RefSeq) spliceosome-associated protein 130 A isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11444450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11444450
03041 Spliceosome [BR:
mtr03041
]
11444450
03036 Chromosome and associated proteins [BR:
mtr03036
]
11444450
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
11444450
Spliceosome [BR:
mtr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
11444450
Complex B
11444450
Complex C
U2 SnRNP specific factors
11444450
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
11444450
TFTC complex
11444450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
11444450
NCBI-ProteinID:
XP_024638584
LinkDB
All DBs
Position
4:complement(55829767..55839460)
Genome browser
AA seq
1225 aa
AA seq
DB search
MYLYNLTLQRPTGIVCAINGNFSGSDDGITQEIVVARGKVLELLRPDKFGRIQSILSVQV
FGTIRSLSQFRLTGAQKDFIVVGSDSGRIVILDYNKQKNVFDKIHQETFGKSGCRRIVPG
QYLAIDPKGRAVMIAACEKKKLVYVLNRDSLARLTISSPLEANKSHTIVFSICAVDCGFE
NPIFAAIELDCSDADQDATGVAASQAQKHLIFYELDLGLNHVSRKWSDQVDNGANMLVTV
PGGADGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKTKNLKPE
EFKLFFLLQTEYGDIFKVTLTDGGGDRVSELNIKYFDTIAVAVSICVLKSGFLFAASEFG
NHALYQFKGIGDDDNDVGASSASLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPVMDMK
VSNLFEEETPQIFTLCGRGPRSSLRIMRTGLAVSEMAVSKLPGIPSAVWTVKKNVMDEFD
AYIVVSFTNATLVLSIGETADEVSDSGFLDTAPSLAVSLIGDDSLMQVHPNGIRHIREDG
RTNEWQTSGKRTIAKVGSNRLQVVIALNGGELIYFEVDVTGQLMEVERHEMSGDVACLDI
APVPKGRLRSRFLAVGSYDKTIRILSLDPDDCMQTLGIQSLSSAPESLLFLEVQASVGGE
DGADHPASLFLNAGLQNGVLSRTVVDMVTGLLSDTRSRFLGLKAPKLFPIIVRGKRAMLC
LSSRPWLGYIHQGHFLLTPLSYETLEYAASFSSDQCFEGVVSVASEALRIFTVERLGETF
NQNVIPLRYTPRKFVLQPKRKLLVVIESDQGALTAEEREAARKECFEAAHAGENKTGSED
QMENGGEDEDNDDSLSDEHYGYPKSESDKWVSCIRVLDPRTGNTTCLLELQENEAAFSIC
TVNFHDKEYGTLLAVGTAKGLQFTPKRSLTAGFIHIYRFLDDGRSLELLHKTQVEGVPLA
LCQFQGRLLAGIGPVLRLYDLGKRRLLRKCENKSFPSSIVSIHAYRDRIYVGGIQESFHY
CKYRRDENQLYIFADDSVPRWLTSSYHIDFDTMAGADKFGNIFFARLPQDVSDEIEEDPT
GGKIKWEQGKLNGAPNKVEEIVQFHVGDVITSLQKASLVPGGGECIVYGTVMGSVGALHA
FTSRDDVDFFSHLEMHMRQDNPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQR
KIADELDRTPGEILKKLEEVRNKII
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaatcaacggc
aacttctccggctcagacgacggtattacccaagaaatcgtcgtcgccagaggcaaggtt
ctcgaacttcttcgccccgacaaatttggccgcattcaatcaatcctttccgtccaagtt
ttcggcaccattcgctccctgtctcagttccgtctcaccggagctcagaaagacttcatc
gtcgtcggttctgactccggcagaatcgtaatccttgattacaacaaacagaaaaacgtt
tttgataaaattcaccaagaaacttttgggaaatcaggttgccggagaattgttcctggt
cagtatcttgcaattgatcctaaaggtagagctgttatgattgctgcttgtgaaaaaaag
aagcttgtttatgttttgaatagagatagtttagctaggttaacaatttcttcgccttta
gaagcaaataaatctcatactattgttttttcaatttgtgctgttgattgtggttttgaa
aatcctatatttgctgctattgaattggattgttctgatgctgatcaggatgctactggt
gtggctgcttctcaagctcagaagcatttgattttttatgaacttgatttgggtcttaat
catgtttctaggaagtggtctgatcaggttgataatggtgctaatatgcttgtgactgtt
cctggtggtgctgatggccctagtggggtgcttgtttgtgctgaaaattttgttatttat
aagaatcagggtcatccggatgttagggctgtgattccgagacgtgctgatttgcctgcc
gagcgtggtgttctcattgtttcggctgctatgcataaaacaaagaatttgaaacctgag
gagtttaaattgttcttccttttgcagactgagtatggtgatatctttaaggtaactttg
actgacggtggtggtgaccgtgtctctgaattgaatattaagtattttgatactattgct
gttgctgtatcaatttgtgtgctcaagtcggggttcttgtttgcagcttccgagtttggg
aatcatgcattgtatcaatttaagggaataggggatgatgataatgatgtgggagcatcg
tctgcgagtctgatggaaacagaagagggttttcagcctgtgtttttccagcccaggaga
ctcaaaaaccttgttaggattgaccaggttgagagtttgatgcctgtcatggatatgaag
gtcagtaatctctttgaagaggagactccccaaatttttactctttgtgggcgcggtcct
cggtcatctctgaggatcatgagaactggtttggcagttagtgagatggcggtttccaag
cttcctggtatacctagtgctgtttggactgttaagaagaatgttatggatgagtttgat
gcatatatcgttgtgtccttcacaaatgccacacttgtgctttctattggtgagactgct
gatgaagtcagcgacagtggttttctggatactgctccctccctcgctgtttctttgata
ggcgatgattctctcatgcaggttcatccaaatggtattaggcatattagggaggatggc
cgtacgaatgagtggcaaacttctggaaagaggacaattgcaaaagttgggtccaataga
cttcaggttgttattgcgctgaacggtggggagcttatatattttgaagtcgatgtaact
ggtcagctgatggaggtggagcggcatgaaatgtcaggagatgttgcttgtttggacatt
gctccagtgcctaaaggcagactaagatcccgttttcttgcagttggctcatatgacaaa
acgatccgaatcttatcgttggatcccgatgattgtatgcagactctaggtatacagagt
ctttcttcagccccagaatctcttcttttccttgaagttcaagcatctgttggtggtgag
gatggtgcagatcatcctgctagccttttccttaatgctggtttgcagaatggtgtcttg
tctagaactgtggtggatatggtcacaggtcttctttctgatacccgttcccgattctta
ggattaaaagccccaaagctgtttcccattattgtaagaggaaagcgtgctatgctttgc
ctgtcaagtcgaccttggcttggttatattcaccaaggacatttccttttaacgcccctt
tcatatgaaacccttgaatacgccgcgtcattttcatctgaccaatgttttgaaggtgta
gtgtctgttgctagtgaggcattgaggatttttaccgttgaaaggttaggagaaacattt
aatcagaatgttattcctcttagatacaccccaaggaaatttgtgctgcaaccaaaacgg
aaacttctggtggtgattgagagtgatcaaggagcacttacagcagaagagcgtgaagct
gcaaggaaagagtgttttgaggctgctcatgctggggaaaataagactggaagtgaagat
caaatggagaatggtggggaggatgaggataacgacgattccctctctgacgagcattat
ggttatccaaaatctgaatcagataagtgggtatcctgcatcagagttcttgatccaagg
acaggaaatacgacctgtcttttggagcttcaggagaatgaggctgcattcagcatatgc
actgtaaattttcatgacaaggaatacggaacccttttagctgttggtacagctaaggga
ctgcagtttacacccaaaaggagtttaactgctggattcattcatatatataggtttcta
gatgatggaaggtctcttgaacttctccacaaaactcaggttgagggtgttcctctcgct
ctatgtcagtttcaaggaagattacttgcaggaattggacctgtactcaggctatatgat
ttgggaaaaagacgattattaagaaaatgtgagaataagtcattccccagctccattgtc
tctattcatgcctaccgtgatcgaatttatgtaggtggcatccaagagtctttccattac
tgcaagtatagacgggatgaaaaccagctttacatatttgctgatgattctgttccaaga
tggcttacttcgtcatatcacatagattttgacaccatggcaggtgcagacaagtttgga
aatatcttttttgcgcggttgccacaggatgtttctgatgagatagaagaagatcctact
ggtgggaagatcaagtgggagcagggaaagctgaatggagctcccaataaggttgaagaa
attgtacaattccatgtaggggatgtgatcacaagcttgcaaaaggcttctcttgtacca
ggtggtggagagtgcattgtatatggaacagttatgggaagtgtcggtgcattacacgcg
tttacttcacgagatgatgttgattttttttctcatttggagatgcatatgagacaggac
aatcctcctttgtgtggaagagaccacatggcttatagatctgcttattttcctgttaag
gatgtgattgatggggacctatgtgagcaattcccaacattgccgatggatctgcagaga
aaaattgctgatgaattggacaggacccctggagagatactaaagaaactcgaggaagta
cgaaataagattatctaa
DBGET
integrated database retrieval system
