Medicago truncatula (barrel medic): 120577294
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Entry
120577294 CDS
T01716
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120577294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
120577294
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120577294
mRNA degradation factors
5'-3' decay
Decapping complex
120577294
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
120577294
NCBI-ProteinID:
XP_039684348
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Position
8:complement(20266788..20273355)
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AA seq
865 aa
AA seq
DB search
MDVFNAAGVDSLVASNNQDLNLLGNLTKDGALFDASQYAFFGKDVAEEVELGGLDDVNDY
IPSVTFNEEEFFHNEEEMDDVRSLSDIDDLTTTFSKLNKIVSGPKSAGVIGDRVSRENSS
ASEWSQRDDVPYWVDEGSQDGKRWSSHPHSSVAHMQESKPLYRTSSYPEQQRQLQHQLQH
RSSEPVPNWFDQQLYDSETADADRRWSSHPHSSISHLEGPMPLHRTSSYPDKQQELHRFL
SEPIWAPKSSFTSYPPPGGRSQQSSPNYSTGQLNIPYAGGAHMALSSQNRSHLFNSASHL
GGPKYEPHLNGNLAQFNTGSPLNNRIQNQWVNQTGLYLGDNSNLLNNMLQQQLYHHNGSV
SPHLLPQLQQQQHRLHYPVQASAGLMSGLQPHLFNHHLPSGSSIVRENRQKPTRKHRVSQ
QGSNASSQKSESCSIQFRSKYMSSEEIESILKMQLAAVTHFNDPYIDDYYHQASLAKKPS
GAKFKFSFCPTKMKDLSSRARANTEPHRFLQVDTIGRISYLPIRQPRPLLEVDPPNSSAS
GGSERIISEKSLEQEPLFAARITIEDGLCLLLDVDDIDRFLKCNLLQDGGTQFTRRRNVL
LEGLATSLHLVDPLGKNGHKAGLTAKDDLVFLRLASISKGRKLLAKYLRLLDPGSELVRI
VCMAIFRHLRFLFGSIPSDSAAAETASDLAMVICQCIEGMDLGSLGACLAAVVCSSEPPP
LRPLGSPAGDGASLLLVSVLESATELLTDSQVASNKKLGNRSFWQGSFDEFFDLLTKYCM
NKYQSIMQSLVIQGEQNVAAIGSDAAKVVSKEMPVELLRASLPHTNDRQRKLLLDFAQRS
SPVAGFNSYAGSSSSSRVNSETVLS
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgtttaatgctgctggtgttgattctcttgttgcttccaacaaccaagatctt
aatcttttgggaaatcttactaaagatggtgcattatttgatgcttcacaatatgcattc
tttggtaaagatgttgccgaggaagttgagttggggggattagatgatgttaatgattat
atcccttctgttacgttcaacgaggaggagttttttcacaatgaagaagagatggatgat
gtaaggtctctttctgatattgatgatctcacaaccactttttcgaagttgaacaaaatt
gttagtggaccaaaaagtgcaggagttatcggtgatcgggtatcaagagaaaattcctct
gcttctgaatggtcacagagggatgatgttccctactgggttgacgaaggttctcaggat
ggcaaacgatggtcttcacatccacattcttctgttgctcatatgcaagaatcaaagccc
ttatacagaacgtcttcctatcctgagcagcaacggcagctgcaacaccaactccaacat
cgctctagtgaacctgttcctaactggtttgatcaacagttgtatgatagtgaaactgct
gatgctgacaggagatggtcgtcgcatccacattcctccatttcacacctagaaggaccg
atgcccttgcatagaacatcttcatatcctgataagcaacaagagcttcatcgttttttg
agtgaaccaatttgggcaccaaagtcttcatttacttcttatcctccccctgggggtagg
tctcaacaatcttctccaaattacagtacaggccagttgaacattccttatgctggggga
gctcacatggcattgtcatcacaaaatcgctctcatctattcaattctgcatcacacttg
ggtggaccaaaatatgagccacatcttaatggaaacttggcccaatttaatactggctcc
cctctcaataatcgaatccagaatcagtgggtcaaccaaacagggttgtatcttggagat
aattcaaaccttctgaataatatgttgcagcagcaactataccatcataatggatcagtg
tctcctcacttactgcctcagttgcagcaacagcagcacagattgcattatcctgttcag
gcgtcagcaggcttaatgtcaggtttacagccacatttatttaatcaccatcttccgtct
ggatcatccattgttagagagaatagacaaaaaccaacccgtaaacatcgggtctctcaa
cagggttctaatgccagtagccagaaaagcgaaagttgttcaatacagttcaggtccaag
tatatgtctagcgaagaaattgagagtattcttaaaatgcagcttgctgctgttactcat
tttaatgacccctatattgatgactattatcaccaagcttctcttgcaaaaaaaccctct
ggggctaaatttaaattttcattttgcccaaccaaaatgaaggatctttcttcacgagcc
cgtgccaatactgagccacacaggtttcttcaggttgatactatagggaggatttcatac
ttgcccattcgtcagcctcgccctcttcttgaagttgatcctccaaactcctctgccagt
ggtggctctgagcgaattatttcagagaagtcccttgagcaggagccattgtttgcagcc
agaatcactattgaggatggtctctgtcttctcctcgatgtagatgatattgatcgtttc
cttaagtgcaatcttctacaagatggtggaacacaattcacaagaagaaggaatgtcctt
ttggaaggactagcaacatcacttcatctcgtggacccacttggaaagaatggacacaaa
gctggtcttactgccaaggatgaccttgtcttcttacgactagcatctatttccaaggga
cggaagctcctagcgaagtatcttcggttgcttgatcctggtagtgagcttgtgcggatt
gtctgcatggctatatttcgtcatttaagatttttattcggtagtatcccctctgattca
gcagcagcagagactgccagtgatcttgctatggttatttgtcagtgtattgaaggaatg
gatcttggttctcttggtgcttgtctggcagcagtggtttgttcctcagagcctcctcct
ctgcgtccccttggaagtcctgctggagatggtgcttcccttcttttagtatctgttctc
gagagcgctactgaacttctaactgattctcaagttgcttcaaacaaaaaattgggcaat
cgttcattttggcagggctcatttgatgaattttttgatcttctcacgaagtattgtatg
aataagtaccagagtataatgcagtcacttgttatacaaggggaacaaaatgtggctgca
attggatcagatgctgctaaagtagttagtaaggaaatgcctgttgagctcttacgtgca
agtcttcctcacaccaacgaccggcagagaaagttattactagattttgctcagcgctct
tcgcctgtggctggatttaacagctatgctgggagcagtagtagtagtcgtgtgaactcg
gagacagtgcttagttga
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