KEGG   Medicago truncatula (barrel medic): 120579378
Entry
120579378         CDS       T01716                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 5B
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03020  RNA polymerase
mtr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120579378
  09124 Replication and repair
   03420 Nucleotide excision repair
    120579378
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mtr03021]
    120579378
   03400 DNA repair and recombination proteins [BR:mtr03400]
    120579378
Transcription machinery [BR:mtr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     120579378
  RNA polymerase III system
   RNA polymerase III
     120579378
  RNA polymerase I system
   RNA polymerase I
     120579378
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120579378
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-GeneID: 120579378
NCBI-ProteinID: XP_039687354
LinkDB
Position
3:complement(5363390..5367220)
AA seq 224 aa
MAMIENGNETRSECLVRICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEF
RSRFGEFPKPHTLGVSVSLRSNPSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLIL
VMQSKMTSYARKELENCPFKVEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVE
EKQLPHMLRTDAIASYYGLEKGQVVKISHSGEMFNSLVMYRCVV
NT seq 675 nt   +upstreamnt  +downstreamnt
atggcgatgattgaaaacggaaacgaaacaagaagcgaatgtttggttcgtatatgcaat
gaagaaagcaacattgaaaccattcgttacttcgaatgcagaaagactctgatggatatg
cttcatgatagaggctacaatgtctctgaatctgatctcactctttctctttctgagttt
cgttcacgttttggtgaatttcctaaacctcatacccttggtgtttctgtttctcttcgc
tctaacccctccatcaaggtacaagttgttttcccaggaacggatgatatcagaaaaagc
aacttgattgttatacaaagccagattgtggacaaagaaaggttgagtaggctgatactt
gttatgcaaagtaagatgacttcatatgctcgtaaagaattggaaaactgtccatttaaa
gttgagatcatacaattgaatgacttgctggtcaatgtgacaaagcatgtgctgcagcca
aagtatgaggttctgactgctaatgagaagcaaaaactgctcaataagtataaggtcgaa
gagaaacagctacctcacatgctaagaactgatgccattgctagctactatggactggaa
aaaggacaagtcgtcaagatctctcacagtggtgagatgtttaattctcttgtaatgtac
cgctgtgtcgtgtaa

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