Medicago truncatula (barrel medic): 120580892
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Entry
120580892 CDS
T01716
Name
(RefSeq) polyadenylate-binding protein 3-like
KO
K13126
polyadenylate-binding protein
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120580892
09123 Folding, sorting and degradation
03018 RNA degradation
120580892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
120580892
03041 Spliceosome [BR:
mtr03041
]
120580892
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120580892
mRNA cycle factors
Stress granule specific factors
120580892
Spliceosome [BR:
mtr03041
]
Complex C
Other components
Complex C specific factors
120580892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
RRM_occluded
DUF5062
Motif
Other DBs
NCBI-GeneID:
120580892
NCBI-ProteinID:
XP_039691040
LinkDB
All DBs
Position
6:complement(15396453..15400521)
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AA seq
618 aa
AA seq
DB search
MAAVVSSPKIVVPAALTGTGRFETASLYVGDLERNVNEGQLYDLFSQIAPVLSARVCRDQ
MTQSSLGYGYVNYSNARDAADAMENLNYYTLNGKPIRIMFSHRDPLIRKTGFANLFIKNL
ETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMND
KKVYVGYFVRRQERSSPKFTNVYVKNLSESYTDEDLKQLFNPFGVITSAVIMKHENGNSK
CFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEK
FQGANLYLKNIDKSLNEEKLKEQFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKA
INEMNGKMIGQKPLYVSVAQRKEDRKAQLQAYFSAIQVSGGNAGYHSSVQRLAPQQIYYE
QGTFGLMAPQPNGYGFQPQFMSGVGTGFVTPNYLLPYHLQRQGHPGNRMGGRAAGNFQQV
RQKKNQMRPHNPNQGLQNGVGMSVDPGNQMMDPSGSAATSTGNHHHGPLSNNSLASALAS
ASQENQHRMLEEHLHPLVGRLAPTNQTAKVTRMLLEMDQSEVIHLIESPEELKMKVAEAM
RFLREASQGPAVGDKIDS
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagtggtttcatcaccaaagatcgttgttccagcagctttgaccggtactgga
agatttgagaccgcttccttatacgttggtgatctcgaaaggaacgtcaatgagggccag
ctttatgatctgttcagtcagattgcaccagtgctttctgctagggtttgccgggatcag
atgacgcagtcatctcttggatatggctatgttaactactccaacgctcgtgatgctgct
gatgcgatggagaatttgaactactatactctgaacggaaagcccattcgtattatgttt
tctcatcgagaccctctcattcgtaaaactggatttgcaaatctgttcattaagaatcta
gaaacatcaatagataacaaggcattgcatgaaactttttctgtttttggaaatgtgctt
tcttgtaaggttgctatggatagcaatggtcattctaagggacatggttttgttcaattt
gacaatgatcagtctgcaaaaaatgctattgaaaagttggatggcatgctgatgaatgat
aagaaagtttatgtagggtattttgttcggcgtcaagaaaggtcatcacctaagttcact
aatgtgtatgtgaaaaacctttctgaatcatacactgatgaggaccttaagcagcttttc
aacccttttggtgtaataacaagtgctgtgatcatgaaacatgaaaatggtaactctaaa
tgttttggttttgtgaatttccaaagctcagattcagcagctactgctgttgagaagttg
aatgggagcacaacgaatgatgggaaggttttatttgtcgggagggctcagaaaaaatcg
gaaagggaggcagagttgaaagctttctttgagcaagaaaagctaaaaagatatgagaaa
tttcaaggagctaacttatatttgaaaaacattgataagagtcttaatgaagaaaaactg
aaggagcagttttctgagtttggaacaataacatcttgcaaggtaatgtctgatgctcgt
ggacgcagcaagggcgtcggttttgttgcttttaccacaccggaggaagcgagcaaagct
atcaatgaaatgaatgggaagatgattggacagaagcccttatatgtttctgtggcccag
cggaaagaagatcggaaagctcagttgcaggcgtatttttctgcaattcaagtatcgggt
ggaaatgctggataccattcaagtgtacaaagacttgctccgcaacaaatttattatgag
caaggtacatttggtctcatggcgcctcagccaaacggatacggtttccagccacagttc
atgtcaggtgtgggaactggctttgttactccaaattacttgctgccatatcaccttcag
aggcagggacatccggggaataggatgggtgggcgtgcagctggtaacttccagcaagtc
cgacagaagaaaaaccaaatgcgacctcataaccccaaccaagggcttcaaaatggtgtg
ggtatgtctgtagatcccggaaatcaaatgatggatccgtctgggagtgctgcaacctcc
actggcaatcaccatcatggtccattgtctaacaactcgcttgcttcagctttggcttct
gcttctcaagaaaatcaacatcggatgctggaagaacatttacatcctctggtgggtcgt
cttgcaccaaccaatcagactgcaaaggtgacaagaatgttgcttgaaatggaccagtca
gaggtcatccatctgatcgagtcacctgaggagctgaagatgaaggttgctgaggctatg
cgattccttcgtgaagcttcacaaggtcctgcagttggtgataagatcgactcataa
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