Medicago truncatula (barrel medic): 25480553
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Entry
25480553 CDS
T01716
Name
(RefSeq) protein SMG7
KO
K14409
protein SMG7
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
25480553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25480553
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
25480553
mRNA cycle factors
Common to processing body (P body) and stress granule
25480553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
25480553
NCBI-ProteinID:
XP_024630249
LinkDB
All DBs
Position
3:complement(17161475..17167547)
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AA seq
975 aa
AA seq
DB search
MMIVKMDNMSAPSSRERAKHLYEKNLELESKRRRSAQVRVPSDPNAWQQMRENYEAIILE
DHAFSEQHNIEFALWQLHYKRIEEFRAYFNAALSSAKSNPSQGGKVHARPDRITKIRLQF
KTFLSEATGFYHDLIMKIRAKYGLPLGHFEDADNRIVMEKDGKKYADMKIGLVSCHRCLI
YLGDLARYKGMYGEGDSINREFTAASSYYLQAASILPSSGNPHHQLALLASYSGDELVVI
YRYFRSLAVDNPFTTARENLIVAFEKNRQSFSQLPVDAKVLAVKESSARPTGKGRGKVEA
KLSTKAASVDASPRIEGASSIRETSKYFCTRFVRLNGILFTRTSLETFNEVLAVVSAGLR
KLLSSGQDEELNFGIDAADNRLFIVRIVCIIVFTIYNVNKESEGQTYAEIVQRAVLLQNA
FAAAFQLMGYIIERCAELRDPSSSYLLPGILVFVEWLACYPDLAKGNDVDENQATLRSKF
WNHYISLLNRLLLVGPMLVINEDESCFNNMSRYEEGETENRLALFEDFELRGFIPLLPAQ
TILDFSRKHSLGNDGEKERKPRVKRILAAGKALANVVSIDQKVIYFDSKEKKFTIGIKPQ
ASKDFVLTTSYSGMLNAEDLLQENPGDESIVEVVQLNQDQYMEGDEDDEVIVFKPVVSET
RADAVVSSWAPHDGLEPALKAFGGDLKFHVNSTSNPLNNLNLQTSPVSVSSMMPQNLQPQ
QTSRWIEEDISLKNNFKGLALFENRHVMKDGLQEAVGFPNHAALPIPIQQSVAADSNGVF
YGLPKASESVVQSKVDAIASSGVITDNLSGMTTSALQATLRKSPVCRPARHLGPPPGFSS
FPSKQGSEYSISDSISGNPIMDDYGWLDGYHLDSSSNDLGPTGPLAYSQSNSHKVSNNGF
SGTVSFPFPGKQFPSVPLQVEKQNGWHECQTYEHLKSHADQQLQPQQQLTNGNQQFPPHP
EKFQGQSIWTGRYFV
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagtaaaaatggataacatgtctgctccctcatcacgggagcgtgcgaaacac
ctttatgaaaagaacctcgaattggagagtaagcgcaggaggtctgctcaagtgcgagtc
ccgtcagatccaaatgcttggcaacaaatgcgtgagaattatgaagcaataattctcgag
gatcatgctttctctgagcagcacaatattgaatttgctctttggcagttgcattataag
cggattgaggagtttagggcatacttcaatgccgctctttcttctgcaaaatcaaacccg
tctcagggagggaaagtccatgcgcgacctgatcggataactaaaataaggctgcagttt
aagactttcctttcagaggcaacaggattttaccatgatcttatcatgaaaatcagagca
aagtatgggcttccacttggtcactttgaggatgcagacaatcggattgtgatggagaaa
gatggaaagaaatatgctgatatgaagataggtttagtatcttgtcatcgttgcctgata
tacttgggtgatcttgctcgttataaaggaatgtatggtgaaggtgactcaataaaccgg
gagttcacagcagcttctagctactacttacaagctgcatctattttgccttctagtgga
aatccccatcatcagcttgctttattggcttcatattctggagatgagctggtggttatt
tatcgctattttcgtagtctggctgtggataatccatttacaactgcaagagaaaacttg
atagttgcttttgagaagaatcgtcaaagtttctctcagctacctgttgatgccaaagtt
ctcgcggtcaaggaatcttcagcaagaccaactggcaaaggaagaggaaaagtcgaagca
aaactttcaacaaaggcagctagcgttgatgctagtcctagaattgaaggagcatccagt
atacgagaaacttctaaatacttctgtactcgctttgtccgtctaaatggaatcttgttt
actcgtacaagcctcgagaccttcaatgaagttcttgctgttgttagcgctggcctgcgt
aaacttctatcttcagggcaagatgaagaactgaattttggcattgatgctgctgataat
aggcttttcattgtcagaattgtctgtatcatagtatttacaatttataatgtgaataag
gagtctgaaggtcaaacttatgccgaaattgtacagcgtgctgttcttcttcagaatgca
tttgctgcggcatttcaattgatgggttacataatagagagatgtgctgagctgcgtgat
ccatcttctagttatcttttacccggcattttggtttttgttgagtggttagcttgttat
ccagatctagccaaaggtaatgacgtcgatgagaatcaggctactctcagatcaaaattt
tggaaccattatatatcccttttgaatagactgcttttggttgggcctatgttggttatt
aacgaggatgagtcttgctttaataacatgagcaggtatgaagaaggggaaaccgaaaac
cgacttgctttgtttgaagactttgagttaagggggtttattccactgcttcctgcacaa
actatcttggatttttctaggaagcattcccttggaaatgatggtgaaaaagaaagaaaa
cctagggtcaaaaggattttagctgcagggaaggctttagcaaatgttgttagcattgat
cagaaagtgatatattttgattcaaaggagaagaaatttacaattggtattaagcctcaa
gcctcaaaagattttgttcttactacctcctattcaggcatgctcaatgcagaagacttg
ctgcaagaaaatccaggagacgaatcaattgtcgaagttgttcaattaaaccaagaccag
tatatggagggagatgaggatgatgaagttattgttttcaagcctgttgtgtctgagacg
cgagctgatgcggttgtctcatcatgggctccccatgatggtttggagcctgctctaaaa
gcatttggaggggatttaaaatttcatgtcaattctacttccaaccctctcaataatcta
aaccttcaaacttcgcctgtttctgttagcagtatgatgcctcaaaacctgcaaccacag
caaacatcaaggtggattgaggaggatatttctcttaagaacaattttaaaggtcttgcc
ttatttgagaataggcatgtaatgaaagatggcctacaagaagctgtaggcttcccaaac
cacgcagcactccctattccaattcaacaatctgtcgctgctgacagtaatggtgtgttt
tacggtctcccaaaagcttcagaatctgtggtacaatccaaagttgatgctattgcatct
tctggagtaattactgataatttatctgggatgacaacatcagccttgcaagctactttg
agaaaatccccagtctgtcgacctgctaggcaccttggacctcctcctggctttagttcc
tttccttctaaacaaggtagtgaatactctatttcagattcaataagcgggaatcctatt
atggatgattatggttggttggatggatatcatttggattcatcatctaatgatttaggc
cccactgggcctctggcttactctcaatcaaattctcataaagtcagtaacaatggattt
agtgggacggtcagctttcccttccctggaaaacaatttccatctgtgcctcttcaggtt
gagaaacagaatggttggcatgagtgtcaaacatacgagcatttaaaatcacacgcagat
cagcagctgcaacctcaacagcagctcacgaatggaaatcagcagtttcctcctcatcct
gagaaatttcaaggacaatcaatttggacaggtcgttactttgtgtga
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