Medicago truncatula (barrel medic): 25482189
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Entry
25482189 CDS
T01716
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25482189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
25482189
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
25482189
Spliceosome [BR:
mtr03041
]
Complex C
Other components
Step II factors
25482189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
S1
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
AAA_16
TsaE
Sigma54_activ_2
Flavi_DEAD
ABC_tran
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
25482189
NCBI-ProteinID:
XP_013466168
UniProt:
A0A072VDW1
LinkDB
All DBs
Position
1:7824127..7831775
Genome browser
AA seq
1223 aa
AA seq
DB search
MGSDIPQDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITDLGHSSNSVEEFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPKPKKQRENLKENANSNTKFKALAISDDRGRAEKLREE
IEIEAREKQKPPMEDDDGYRDRDRRDRHRDRYDRRGNDRDRDRRERDDKRGSDRDRGDRR
DRDDTRGNARDRDRYEKDDKRRDDRDRDRYERDDKRGNDRDRDRDRDWYERRRRDEYEED
EGGREENGGDEKGRGGRDTRRGGGSGEPELYMVYKGRISRVMDTGCFVSLDEFRGKEGLV
HVSQMATRKIANAKEVVKRDQQVYVKVISVSGSKLSLSMRDVDQHSGKDLLPLKKSSEEE
AFRTNPQDSKDGPVARTGLSGIRIVEEDDMGSSRRPLKRMSSPERWEAKQLIASGVLSVS
EYPTYDDEGDGVMYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGR
AAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYD
MPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKT
TQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD
TVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIV
TSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGD
ILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKV
VVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG
PGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLSMKAMGINDLLSFDFMDPPSPQALI
SAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTG
NIFYRPREKQAQADQKRARFFQPEGDHLTLLAVYESWKNKNFSGPWCFENFVQSRSLRRA
QDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYI
HPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQ
ERIEPLYDRYHEPNSWRLSKRRA
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgggttccgatattccacaagatggattgaagaaactggagtatctttcactcgtatcc
aaagtatgcaccgagttagaatctcacaccggcaccggcgacaaagttctcgccgaattc
atcaccgatttaggtcactcttccaactccgtcgaagaattcgacgctaaattgaaagaa
aacggtgctgaaatgcccgattattttgtcagaacgcttctcactataattcatgcgatt
cttcctccaaaacctaagaagcagagagaaaatctgaaagagaatgccaattcgaacacg
aagtttaaggctttggcgatttcagatgataggggtcgtgctgagaagctgagagaagag
attgaaattgaagctagagagaaacagaagccaccaatggaagatgatgatggttataga
gatagggatagaagagatagacatagagatagatatgatagaagggggaatgatagagat
agagataggcgtgaaagagatgataaaagggggagtgatagagatcgtggtgataggcgc
gatagagatgatacaagaggcaatgctagagatagagataggtatgaaaaagatgataaa
agaagagatgatagggatagggatcgatatgaaagagatgataaaagggggaatgataga
gatagggatagggatagggattggtatgagagacgaaggagagatgagtatgaggaggac
gaaggtgggagggaggagaatggtggtgatgagaaagggaggggaggaagagatacgagg
cgtggtggtggttctggtgagccggagttgtatatggtttataaaggaagaatttcaagg
gtgatggatacggggtgttttgtttcgttggatgagtttagagggaaagagggcttggtt
catgtttctcagatggctactaggaagattgcgaatgctaaggaggttgttaagagggat
caacaggtttatgtgaaggtgatatcagtttctgggtcgaagttgagtttgtctatgagg
gatgttgatcagcatagtgggaaggatttacttccgttgaagaagagttcggaggaggag
gcttttaggacgaatccacaagattcaaaggatgggccggtggcgagaactgggctttct
gggattaggattgtggaggaggatgatatgggttcttcgcgtaggccgttgaagagaatg
agctctcctgagagatgggaagcgaaacagttgattgcttcaggggttttgagtgtttca
gagtatccgacttatgatgacgagggagatggagtgatgtaccaagaagaaggtgctgag
gaagagcttgagattgagatgaatgaagatgagcccgcttttttgcaagggcagagcaga
tactcgatggatatgtctcctgttaagatctttaagaatcctgaaggttctctaggccgt
gctgctgcactacagtccgcccttataaaggagagaagggaagtacgagaacagcagcag
cgtaccatgcttgattctattccaaaggatctcaatcgtccttgggaagatcctatgcca
gagtcaggtgaaaggcatcttgctcaggagttgaggggtgttggtttatcggcctatgat
atgcctgaatggaagaaggatgcctatgggaaaaccattacttttgggcaaaggtcgaag
ctttctattcaagaacagaggcagagtttgccaatttacaagttaaaaaaagagttgatt
caggctgtccatgataatcaggtcttggttgtgattggtgaaaccggttcgggtaagact
actcaggtcacacagtatcttgctgaagcgggttacaccaccagaggtaaaattggatgt
actcaaccccgtagggtggctgcaatgtcagttgcaaagagagttgccgaagagtttggg
tgtagattaggagaggaagttggttatgccattcgatttgaggattgcactgggcctgat
actgtaatcaagtacatgaccgatggtatgcttcttagagaaatattggttgatgagaat
ctgtcgcagtattctgttataatgcttgatgaagcccatgagagaactattcatacggat
gttcttttcggactactgaagcagctggtgaagcgtagacccgagttgcgattgattgtc
acatcagctactcttgatgctgaaaagttttcaggatatttctttaactgtaacatcttc
acaattcctggaagaacttttcctgtggagatactttatactaaacagccagaaagcgat
tacttggatgcatctttgatcactgtcctacagattcatttgacagaacctgaaggagac
attcttctcttcttaactggtcaggaggagattgattttgcttgccagtctctctatgag
cgaatgaaaggattaggtaagaatgtcccagagctgatcattttacctgtttatagtgcc
cttcctagtgaaatgcaatctaggatattcgatcctgctcctcccgggaaacggaaagtg
gttgtggctacaaacattgccgaggcatctttgactattgacggaatattttatgttatt
gatccggggtttgctaagcaaaatgtttataacccgaagcaaggtcttgattccttggtg
ataactccgatatcacaagcgtctgccaaacaaagagctggacgtgcagggcgtactgga
cctggaaagtgttatcgcctctataccgagagtgcatatagaaatgaaatgtctcctact
tctattccagagattcaaaggataaatttaggcatgacaactcttagcatgaaagccatg
ggcataaatgatcttctgtcatttgattttatggatccaccatcacctcaagcacttatt
tccgccatggagcagctttacagtcttggagctttggatgaagagggtcttctaaccaaa
ttggggaggaaaatggctgagtttcctttggatccgccactgtccaagatgttgcttgcc
agtgtagatcttgggtgcagtgatgagattctgaccataattgccatgatccagactggc
aatatattttacaggcccagggagaaacaagcccaagcagatcagaaaagggcaaggttt
ttccagccagagggtgaccatcttacgcttcttgctgtttatgaatcctggaaaaataaa
aacttttctggaccttggtgttttgagaactttgttcaatctcgatcgttgagaagagcg
caggatgtaaggaaacaacttctcaccatcatggataagtacaaattggatgttgtgagc
gctggaaaaaacttcacaaagattaggaaggctatcactgcagggttcttttttcatgca
gcaagaaaggacccccaggaaggttacagaacactagttgagaatcagcctgtgtatatc
catccaagttcagctttgttccagaggcaaccagactgggtcatataccacgagcttgta
atgacaacaaaggaatatatgcgcgaagtcacagtcatagaccccaaatggcttgttgaa
ttggctccaagattcttcaaagttgccgatcccacaaagatgagcaaacggaagcgtcaa
gagcgtattgaaccactttatgatagataccacgagccaaactcatggcgtttgagtaaa
cgccgtgcatga
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