Medicago truncatula (barrel medic): 25482697
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Entry
25482697 CDS
T01716
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mtr03009
]
25482697
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
25482697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
WDR54
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_2nd
Beta-prop_BBS7
Beta-prop_SPT8
Beta-prop_DCAF12
Beta-prop_Nup120_160
Beta-prop_LRRK2
Beta-prop_SCAP
PEP5_VPS11_N
Nucleoporin_N
Beta-prop_NUP159_NUP214
ELYS-bb
PROPPIN
Beta-prop_WDR19_2nd
VPS11_N
LZ3wCH
Motif
Other DBs
NCBI-GeneID:
25482697
NCBI-ProteinID:
XP_013466742
UniProt:
A0A072VH71
LinkDB
All DBs
Position
1:12746269..12751273
Genome browser
AA seq
438 aa
AA seq
DB search
MDVVLASSSVDDGIGCWDLHTGAEQLRYNSCSSPFHGLVSLGSRFLASSQLHHPSSASLF
FWSFSKPQVEVKSFPAEAIKPLAANHQGTYLVGGALSGDIYLWEVETGRLLKKWHAHLRA
VTCLVFSDDDSLLISGSEDGYVRVWSLFSLFDDLRSREEKNLYEYSFSEHTMRVTDVVIG
NGGCNAIIVSASDDRTCKVWSLSRGTLLRSIVFPSVINAIVLDPAEHVFYAGSSDGKIFI
AALNTERITTIDNYGMHIIGSFSNHSKAVTCLAYSKGRNLLISGSEDGIVRVWNAKTHNI
VRMFKHAKGPITNIIVVRQEIDPSNHTSSNLQAATKKHGSYLLPPLEKYANSTDSDLKTA
INLGGIRGCMDVSYNSSNLISNHIKELQQQGSATASEIEMEKLKHEYQRTMEMANQWKKM
YENLHEFGIKELLDGGQT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgttttggcctcttcatctgttgacgatgggataggttgttgggaccttcat
acaggtgctgagcagctacgttacaattcatgttcttcacctttccatggccttgtctct
ctcggttctcgctttcttgcttcttctcagcttcatcacccttcttctgcttctcttttc
ttctggtccttctccaagcctcaagttgaagttaagagctttcctgctgaagctattaag
ccccttgctgctaatcaccaaggcacctatctggtcggtggagctttgtctggtgatata
tatttgtgggaggttgaaactggtagattgcttaagaaatggcatgctcatttaagggcc
gtcacttgcctggtattttctgatgatgactcactgctgatatctggttctgaagatgga
tatgtaagagtttggtcgcttttcagtttatttgatgatttgagaagccgggaagaaaag
aatctctacgagtatagtttttcggagcacaccatgcgtgtaactgatgttgtgattggt
aatggagggtgcaatgcaattatagtttcagcatcagacgatcggacttgtaaggtatgg
agcttatcgaggggaacactgctaagaagtatagttttcccttcagtaattaatgccatt
gtattggatccagctgaacatgtgttttatgccgggagtagtgatggaaaaatatttatt
gctgcacttaacactgaaagaatcactactattgataattatgggatgcatatcattggt
tcattttctaatcacagcaaggcagttacttgcttagcatatagcaaaggtcggaatttg
ttaatttctgggtctgaggatggaatagttcgtgtttggaatgctaaaactcacaacatt
gtccgcatgtttaaacatgctaaaggacctataactaatattattgttgttagacaagaa
attgacccaagcaatcatacatcttctaatttacaagcagccacaaagaaacatgggtct
tatttactccctccattagaaaaatatgcaaattcaacagattcagatttaaagactgct
atcaacctaggtggtatcaggggatgcatggatgtttcatacaacagttctaatttgata
tctaatcacattaaggagcttcagcaacaaggttcagccaccgcttctgaaatcgagatg
gagaaactaaagcatgagtaccaaaggacaatggagatggctaaccaatggaagaaaatg
tatgagaacttgcacgaatttggtataaaggagctattggatggtggccaaacatga
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