Medicago truncatula (barrel medic): 25482846
Help
Entry
25482846 CDS
T01716
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25482846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
25482846
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
25482846
Spliceosome [BR:
mtr03041
]
Complex C
Other components
Step II factors
25482846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_22
AAA_19
HA2_N
zf-RING_UBOX
IBR_1
ResIII
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-RING_2
Helicase_RecD
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
25482846
NCBI-ProteinID:
XP_039690225
LinkDB
All DBs
Position
1:complement(14375121..14395102)
Genome browser
AA seq
1454 aa
AA seq
DB search
MYVQITVLIGETGSGKSTQLVQFLADSGVGANESIVCTQPRRIAAKSLAERVREESGGCY
EDSSIKCYSSFSSWNKFDSRIIFMTDHCLLQHYMSDKNLSGISCIIVDEAHERSINTDLL
LALIKNLLSKRVEMRLIIMSATADAKQLSDYFYGCGIFRVPGRNFPVEVRYVPSEYEGRS
RSSVVDPYVSDVVKMATEIHRTEKEKEGTILAFLTSQLDVEWACEKFEAPSAVALPLHGK
LSSEEQFHIFKNYPGKRKVIFSTNVAETSLTIPGVKYVIDSGLVKDSRFDPSSGMNVLKV
CWISQSSANQRAGHAGRTEPGRCYRLYSEADYQSMEPNQDPEIRRVHLGVAVLKILALGV
KNVQDFDFVDAPSTSSIERAIGNLIQLGAIKLNNDVYELTPEGRRLARMEIEPRLGKLVL
GCFQYTLGREGIALAAMMANARSVFCRVGNEDDKQKSDCQKVQFCHCEGDLFTLLSVYME
WEVQPQNWKNKWCWENSINAKSMRRCQNTFLELESCLESELGLVVPSYWRWDPHNPSIHD
ENMKKAILSSLSENVAMYSGRNQLGYIVAQTEKHVQLHPSCSLLVFSQRPSWVVFYELCS
ESNEYLFCVSAVDFQSLYSLKPPPLFDVSKMEEQKLQTKTLVGFGKHVLKRFCGKGNLLG
HVSRIRKACMDERIFVDVNFDENHIQLYACSNDMNTASKLVNDVLQYEKKRLHTECMEKC
LYHGFGSSSPVAMFGSGAEIKHLELEKLPLSVDVFHPNVNAIDEMELLMFFEKNTSGCMC
DMQKFTGMVKDVEDKAKWGKITFMTSNAAKRAAELDGEEFCGSPLKIVHSQSAMGGDTTF
SFPAVEARISWLRRPIKAVGIIKCDKNDVDFIIRDFEKLIVDGRRYVRCAPSDKYLDNIL
ITGLDKEVPETEILDVLRSATSRRILDFFFKRGDAVENPPCSVIAETILKEISPLMPKKK
PHISSCRVQVFPPKPKDYSMNALIHFDGRLHLEAAKALEKIDGKVLPGFHSWQKIKTQRL
FHSTLIFSPPVYHVIKGQLEKVLARFNNLEGLEWKLDITPNGSHRVKITANATKTVAEGR
RLLEELWRGKVIVHDNLTPATLQPILSKDGSSLTSSIQKATSTYIQFDRRNMKLRIFGSP
DKIALAEKKLIQSLLSLHDEKQSVIRLSGRDLPSDFMKQVVKNFGPDLHGLKEKVPGADL
RLNTRNRTILCHGNSELKSRVEEITFEIARLSNPSSERFDTGPSCPICLCEVEDGYQLEG
CGHLFCRSCMVEQCESAIKNQGSFPIRCAHQGCGNHILLVDFRTLLSNDKLEELFRASLG
AFVASSSGTYRFCPSPDCPSIYRVADPDTASVPFVCGACYSETCTRCHIEYHPYVSCERY
RQFKDDPDSSLRDWCKGKEQVKNCPACGHVIEKVDGCNHIECKCGKHICWVCLEFFTTSG
ECYSHMDTIHLGVD
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtacagataacagtgttgattggagagacaggttctgggaagagtactcaatta
gtgcagtttcttgctgattcgggcgttggggccaatgagtcaattgtgtgcactcagcct
cgcaggattgctgcaaaatcattggctgaaagggtccgggaagaaagtggtggatgttat
gaagacagttcaatcaagtgttattcttcattttcatcttggaacaagttcgattccagg
ataatcttcatgacagatcattgtttattgcagcactacatgagtgataaaaatttgtct
gggatttcgtgtattatagtggacgaggctcatgaaaggagtataaatactgatttactg
ttggcattgataaagaatttactttctaagagggttgaaatgcggcttatcatcatgtct
gccacagctgatgcaaagcagttatctgattacttctatggttgtggaatttttcgtgtg
ccagggagaaacttccctgtggaggtgagatatgttccatctgaatatgaaggacgatct
cgttcttctgttgtggacccttatgtttccgatgttgttaaaatggcaactgaaattcac
agaacagagaaagagaaagaaggaactattcttgcctttcttacatcacagttagatgta
gaatgggcttgtgaaaagtttgaagccccctctgcagtagctttgcccttgcatggaaaa
ctttcgtctgaagagcaatttcatattttcaagaactatcctggaaaaagaaaagtgata
ttttcaacgaatgtcgcagagacatcacttacgattcctggtgttaagtatgtgatagat
tctggattggttaaagatagtcgttttgatcctagcagtgggatgaatgtacttaaggtt
tgctggatcagccagagttctgctaaccaacgggctggtcatgctgggaggaccgagcct
ggtagatgctatagactgtactcagaagctgattatcagtctatggaaccaaatcaagat
cccgagattcgaagagttcatcttggcgtagcagttttgaagatccttgctttaggggtg
aagaatgtccaggatttcgattttgtggatgctccatccactagctctattgagagggca
atcgggaatctaattcaattaggagccattaaactcaacaatgatgtttatgaattaact
cctgaaggtaggcgcttagcaagaatggagattgaacccaggcttggtaaactcgttctt
ggttgtttccaatataccttgggtagggaaggcattgccctagctgccatgatggccaat
gctagaagcgtattttgcagagttggtaatgaagatgataagcaaaaatctgattgtcag
aaagtgcaattttgccattgcgagggtgacctttttactcttctctctgtgtacatggaa
tgggaagtccagcctcaaaattggaagaataaatggtgttgggaaaacagcatcaatgcc
aaatctatgaggagatgccaaaacacatttttggagttagaatcttgcctagagagtgaa
cttggccttgttgttccaagttactggcgctgggaccctcataacccttctattcacgat
gagaacatgaaaaaggctatactgtcctcactttctgaaaatgtagccatgtactctgga
cgcaatcaacttggttacatagtagctcaaacggagaaacatgttcaactacatccatct
tgttccttgcttgtattttcccagaggcctagttgggtggttttttatgagctttgttca
gagtctaatgaatatttgttctgtgtgagtgctgttgactttcaatcattatacagcctt
aaacctcctcccttgtttgatgtatccaagatggaagagcagaagttgcaaacaaagacg
ctggttggttttggcaaacatgttctcaagagattttgtgggaaaggaaatttgctcggt
catgtttctcgtattaggaaagcttgtatggacgaaagaatatttgttgacgtgaatttt
gacgagaaccacattcagctgtatgcctgttccaatgatatgaatacagctagtaagctg
gtgaatgatgttttacaatatgagaagaagaggttacacactgaatgtatggaaaaatgt
ttgtatcatgggtttggttcctcatcacccgtggctatgtttggctctggtgctgagata
aagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcacccaaacgtaaat
gcaattgacgaaatggagctcctgatgttttttgagaaaaatacttctggttgtatgtgt
gacatgcaaaagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaag
ataacatttatgacctccaatgctgccaaaagagctgctgagctggatggagaagagttt
tgtggttcgcccctaaaaatagttcattcacagtcagctatgggaggggatacaacattt
tcatttcctgcagttgaagcaagaatttcttggcttcgtaggcctatcaaagcagttggc
ataatcaaatgtgataaaaatgatgtggatttcatcattagagattttgaaaaacttatc
gtagatggaagaaggtatgttcgttgtgctcccagtgataagtatttggacaacattctt
ataactgggcttgacaaagaggttcctgagactgaaattttggatgtgctaagatctgct
actagtagaaggattctagattttttctttaagagaggagatgctgttgaaaatccacca
tgcagtgtgattgcagagacaatattaaaagaaatctcccccttaatgcccaaaaaaaaa
cctcacattagttcttgccgtgttcaggtgtttccacctaagccgaaggattattcgatg
aatgctttaattcattttgatggaagattacatttagaagcagcaaaagctttggagaaa
attgatggaaaggtgttgcccggatttcattcttggcagaagataaagacccagcgtttg
tttcacagcaccttgatattttctcctccagtgtatcatgtgattaagggacaactggaa
aaagtgctggcacgtttcaacaatttagaaggtcttgagtggaaactagacataactcct
aatggctcccaccgagtgaaaataacagccaatgccacaaagacggtggcagaaggtagg
agacttctggaagaactgtggagagggaaagtcattgtccacgacaacctcacccctgcc
actctacagcccatattgtccaaagatggttctagtcttacaagctcaatacagaaagcg
acttcaacttacattcaatttgataggcgcaacatgaagttacggatatttggttcgccg
gacaagattgctttggctgagaaaaagttaattcaatctctcttgtccctccatgacgaa
aaacagtcagtaatccgtctgagtggaagggacctaccttctgattttatgaagcaagtg
gttaagaatttcgggccagatcttcatggactaaaagagaaggtacccggggcagatctt
aggcttaacacacgcaaccggacaatcctttgtcatggtaactcggagttgaaatcaaga
gtggaggaaataacttttgagattgcacgtttaagcaatccttcaagcgagagatttgac
actggacctagttgcccaatttgcttgtgtgaggttgaggatggatatcagcttgaaggt
tgtggtcatttgttctgccggtcatgtatggtggagcagtgtgaatctgctataaaaaac
caaggcagtttcccaatacgttgtgctcatcagggctgtggaaatcatattttgcttgta
gatttcagaactctcctgtcaaatgataagttggaagaacttttcagggcttctttggga
gcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctca
atctatagagttgcagatcccgacacagctagtgttccatttgtttgtggggcatgttat
tcagagacttgtaccaggtgccacatagagtatcatccgtacgtttcatgtgagagatac
cgacaattcaaggatgacccggattcatctctgagggattggtgcaaagggaaagaacaa
gttaagaattgcccggcatgtgggcatgtaattgagaaggtagatgggtgcaatcacatt
gagtgcaaatgtggaaaacatatctgctgggtttgcttagagttctttacaaccagtggt
gaatgttatagccatatggatactatacacttgggcgtagattaa
DBGET
integrated database retrieval system
