Medicago truncatula (barrel medic): 25483069
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Entry
25483069 CDS
T01716
Name
(RefSeq) polyubiquitin 9
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
25483069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mtr04121
]
25483069
Enzymes [BR:
mtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
25483069
Ubiquitin system [BR:
mtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
25483069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Rad60-SLD
Rad60-SLD_2
Plexin_RBD
TBK1_ULD
Dsc3_N
Ubiquitin_2
DUF2604
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
25483069
NCBI-ProteinID:
XP_024631134
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All DBs
Position
1:18060261..18061551
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AA seq
176 aa
AA seq
DB search
MKSNDETIVLQEENDGKLFILNNRSMLLGNAVNLCCIGPNSSESDYSYDILARSQISKLK
LQSFVKNVQQVPLATLSSELLVIPFGSSEPLKLDICITPRMQIYIRTQTGKTYPLRVESS
DTIMNVKKKILDKEDIAVHQQRLIFDGKQLEDNRTLADYNIQEKSTIHLCLRLIGN
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctaatgatgaaaccattgttcttcaagaggaaaatgatggtaaactatttatt
ctcaataatagaagtatgcttttgggaaatgcagtcaatctttgctgcattggtcctaac
tcttctgagtccgactatagttatgatatattggctaggtctcagatatccaaactgaaa
ttacagtctttcgtgaagaacgtccaacaggttcctttagcaactctttcatcagagttg
cttgtgattccatttggttcttctgaacctctcaagctagatatttgcataacccccagg
atgcaaatctacataaggacccagactggaaagacataccccctgagggtggagagttca
gacacgataatgaatgtgaagaagaagattcttgacaaggaagatattgcagtgcaccag
caacgtctgatctttgacggtaagcaactagaggacaaccggacccttgccgattacaac
atccaagagaagtcaaccattcatctctgcctccgcctcattgggaactag
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