Medicago truncatula (barrel medic): 25483514
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Entry
25483514 CDS
T01716
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X2
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
25483514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mtr03036
]
25483514
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
25483514
SWR1 complex
25483514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
HEAT_ULK4
Motif
Other DBs
NCBI-GeneID:
25483514
NCBI-ProteinID:
XP_013467663
UniProt:
A0A072VUA9
LinkDB
All DBs
Position
1:26613976..26632288
Genome browser
AA seq
2044 aa
AA seq
DB search
MASKGPRSKIDPEYKVKRHKAVEASREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
KKVALKASKEGMLDPAARGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMEL
DEKKKKALDKQLEFLLGQTERYSTMLAENLVDANAPAEKNSAEHQMSFQCKDIGGDIINE
PKEANVEYKSDAPDHDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALHSEMDLP
IEELLKRYAGDKGELARQESSPESSEDGGQIVRTGDPDGQEELASENGDHISISEICTND
SSTVLGRRCDDSNGDVATPTNNLSQNEVHQSENLKEVPSEAANENVPFDFSDEEEDGDFL
FGTEDKDDETTLSEEEKLDRVDAIDPKDEIALLQKESDMPVEELLARYKKDLSDDWDQED
ESDCASASSEDQRNSPVHDDAKQTDPDISVDEDMNSSEKLATVQTQAEEQGEAPCENSEE
RESEDIIADAAAAARSVQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKKL
NGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILT
YFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQ
RWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEG
EEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSE
TQATLANANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIHTQLSSSICSMLLPSS
FSTVDLEGLGLLFTHLDYSMTSWESDEVQAIETPATLIMERTDRADLEVIKPGLKCQKKQ
LGTNIFEEIQKAIWEERIREAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTIRHPVYDIH
QKKANPVSYLFPSKLADIVLSPVERFQRMIDVVESFMFAIPAARASPPVCWCSKSETTVF
LHPSYKQQCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHR
ALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSG
GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAK
QKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKDTPKEKNQNSGEVSVTNADVDA
ALKHVEDEADYMALKTRELEEAVDNQEFTEEASGRLEEDEYVNEDDEPQELGESVSNLNK
ENELMLNGGDPNEDKLPAVVAKDDDVDMLADVKQMAEAAAAAGQALSAFENELRPIDRYA
IRFLELWDPIIDKAALESEARIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFA
TTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKNRTQAPSESKPKPKKKPKKTKFKSLK
KGSLTSGVRTVKDELRAVPMVIDDDDVVTSPDFVSPSSSMHKKRKKSKLTADGEEEKRSK
KTKKSKRDLLDIYDSDLESNSLDMQDEHAESDPYKSLVVSEQKTVGRSRMGGKITITPMP
VKRVFIIKSEKLKKGNIWYKDCIPSADFWLPQEDAILCAVVHEYGPNWSFVSEILYSMTA
GGAYRGRFRHPVHCCERFRELFQKYILFSMDNANHEKINSTTSGKALKVTEDNIRILLDV
ASEQANRELLLQKHFFALLSSVWKVGSRVDRRQNPPATCNGLYFDQSFFTSIGQHSQNPP
NKPYDRMTFANSAQSKKLIAAALDDMRSRPENDKIFLSNQGEDMPVSADQVDITLEFPKE
ESDSLSSFPSVIKLSIKGDEAPPSLKHTRDDHLKMCYSAAENRFRDIAKACEEDSSGWAS
PTNDARSRPGSKIQSSGKQRSSISDITKLSRSKTKRASVDSNEMHRHQAELLPPVPSLHE
LTLDLPSSTMDEFGFNMDSNFTFDLNEESSLERENFGVVPHDYVAELIPGLDDCIAFSEY
TDIR
NT seq
6135 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaaaggtccaaggtctaagattgatcccgagtataaagttaaacggcataag
gctgttgaagcttcaagggagcctagacgacccaaaactcattgggaccatgtcttagaa
gagatggtgtggctatcaaaggacttcgagtcagagaggaaatggaaattagctcaggca
aagaaagttgctttaaaagccagcaaagaaggcatgttagatccagctgcaaggggtgaa
aagaagatgaaggaagaagagcagcggttaagaaaagttgcactaaatatttctaaggat
gttaagaaattttggacaaaaatagaaaagctggttctttacaaacatcaaatggaactt
gatgagaaaaagaaaaaggcacttgacaaacagcttgagtttcttttagggcaaactgag
agatactcaactatgttggccgagaatcttgtggatgctaatgcaccagcagagaaaaat
tctgcagagcatcagatgagttttcaatgcaaagatataggcggagacattatcaatgaa
cctaaggaagctaatgttgagtataaatccgatgcacctgatcatgatgaagaatatgat
gtacaatctgacgatgtatcggatgatgatgagcaaacgctcgaggaagatgaggctctt
ataactaaagaagaacggcaagaggaattggcagctttgcacagcgaaatggatcttcca
attgaggagttactcaaacgttatgctggagataaaggagaattggcaaggcaggaaagt
agtccagagagtagtgaagatggtggacagatagttagaactggtgatcctgatggccag
gaagaacttgcatcagaaaatggagatcatatatctatcagtgaaatatgtacaaacgac
tccagcacggtcctcggtcgacgttgtgatgacagtaacggtgatgtggctacaccaaca
aataatctatctcaaaatgaggttcatcaatctgaaaatctcaaagaggttcccagtgag
gcagccaatgaaaatgttccatttgatttttctgacgaagaggaagacggcgactttttg
tttggcacagaggataaggacgatgaaacaaccttatccgaggaagaaaaactggacaga
gttgatgcaattgatccaaaggatgagattgcattactacaaaaagagagtgacatgcct
gttgaggaactgcttgcaaggtataaaaaggacctgagtgatgattgggatcaggaagat
gagtcagattgtgcttctgcttcatcagaagaccagcggaattcaccagtccatgatgat
gctaagcagacagatcctgatatttctgtggatgaagatatgaattccagtgagaaactg
gctactgtacagacacaggcagaagaacagggggaagcaccttgtgaaaattcagaggaa
agagaaagtgaggatataattgctgatgcagctgctgctgcaagatcagtacaaccaact
ggaaacactttctccacaactaaagtgcgtacaaaatttccctttctactcaagtactct
cttcgtgaatatcaacatattggattggattggctcgttacaatgtatgaaaaaaagctg
aatggaattttggcagatgaaatggggcttggaaaaaccattatgactatagctttgctt
gcacatcttgcctgcgaaaaggggatttggggtccacatctaattgtggtgccaactagt
gtgatgcttaactgggagactgaatttctgaaatggtgtcctgcgttcaaaattttgacc
tatttcggaagcgcaaaggagcgaaaacataaaagacaaggatggttaaaaccaaactca
tttcatgtgtgcataacaacttacagattagttattcaggattccaaagttttcaagcgc
aaaaagtggaaatacttgatcttagatgaagctcacctcattaaaaactggaaatcacaa
aggtggcagacactgctgaatttcaattcaaaacgacgaattctgttgaccggtacacca
ctacagaatgatctcatggaactgtggtctctcatgcatttcttgatgccccatgttttc
cagtcacaccaagagtttaaggattggttttgtaatcctatatcaggaatggtcgaggga
gaggaaaaagttaataaggaggttgtagatcgcctgcataatgtccttcgtccgttctta
ctccgtcgattgaagagagatgtagaaaagcaacttccaatgaaacatgagcatgtcata
tactgtaggctgtcaaagaggcagaggaatttgtacgaagattttattgctagctcagag
actcaagctactcttgcgaatgccaatttttttgggatgattagtatcatcatgcaactt
cgcaaggtttgtaatcatcctgacctatttgagggccgtccaatcgtcagttcttttgat
atgtgtgggattcatactcagttaagttcttctatttgctccatgcttttgcctagctcc
ttttctacagtcgacttagaaggtttgggtcttctatttactcatcttgactatagcatg
acatcttgggagagtgatgaagtgcaagctattgagacccctgcaactttaattatggaa
cgcactgatagggctgacctggaagtaattaagcccggactgaaatgtcagaaaaagcag
ttaggaacaaacatttttgaagagattcaaaaggcaatttgggaagagaggataagagag
gcaaaggaacgtgcagcagctattgcatggtggaactccttgaggtgtaaaaaaagaccc
atctactcaacgactctaagggaccttgttaccataaggcatcctgtatatgatattcat
caaaagaaggcaaaccctgtttcatacttgttcccatcaaaactggctgacattgttctc
tccccagttgaacgatttcagaggatgattgatgtggttgaaagtttcatgtttgcgatt
cctgctgcccgagcatcccctcctgtttgctggtgcagtaaaagcgagacaacagtgttt
ctgcacccatcttacaagcagcaatgctctgatattctgtcaccactattgtcacccatc
aggcccgcaattgttcgtcggcaagtatatttcccagacaggcgacttatacaattcgac
tgtggaaaattgcaggagctagcgattttgctgaggaaattaaaatcagaaggtcaccga
gctctgatattcactcaaatgactaagatgcttgacatattagaagccttcattaatttg
tatggttatacttacatgcgcttagatggatcaacccaaccagaggagaggcagacctta
atgcagcgttttaacacaaaccccaaatattttcttttcatcttgtcaactcgtagtggg
ggtgttggtatcaatctagttggagctgacacagttattttttatgatagtgactggaat
cctgctatggatcaacaagctcaagatcggtgccacagaattggccagacgcgtgaagtc
catatatatcgattgattagtgagagcaccattgaggaaaatattttgaagaaagcaaag
caaaagcgcgcacttgatgatctggttatacagagtgggggttataatactgagttcttt
aagaagcttgatcctatggaactattttcaggtcatagaacactctcaattaaagatacg
ccgaaggagaaaaaccagaacagtggagaagtttctgtaactaatgcagatgtagatgct
gcattaaaacatgtcgaagatgaggcagattatatggccctgaagacacgtgaactggaa
gaagctgtggataaccaggaatttacagaagaagccagtgggagacttgaagaggatgag
tatgtaaatgaggatgatgagcctcaagagttgggtgaatctgtctccaatttgaataaa
gagaatgaattaatgttaaatggaggtgatcctaacgaagataaactacccgctgttgtt
gccaaggatgatgatgttgacatgctggcagatgtcaaacagatggcggaagctgcagct
gcagctggacaggctttatcagcctttgagaatgagctacgccctattgaccgatacgcc
attcgttttctagagctgtgggatccaattatagataaggcagccttggaatctgaagcc
aggattgaggacactgagtgggaattggatcgcattgaaaggtataaggaggagatggaa
gccgaaattgacgaagatgaggagcctcttgtatatgaaagctgggatgctgattttgca
acaacggcttatcggcagcaagtagaggccttggctcaacatcagttaatggaggaactt
gaatatgaagctaaactgaaagaggaagctgaagaagagaaaaacaggactcaagcacca
agtgagtcaaagcccaagcctaaaaagaaaccaaagaaaacaaagttcaaatctctgaag
aaaggatctctaacctctggtgtaagaactgtgaaagacgagctacgagcagtgccaatg
gtcatagatgatgatgatgttgtcactagtcctgattttgtgtctccaagttcaagtatg
cataaaaaacgcaagaagtctaaattaacagctgatggtgaagaagaaaagagatctaag
aagaccaaaaagtccaagagggatcttcttgacatctatgattcagatttagaatccaac
tcattagatatgcaggatgaacatgcagaatcagatccatataaaagtctggttgtgtcg
gaacagaaaacagttggcaggagtaggatgggaggaaaaataaccatcactccaatgcct
gtgaaacgtgtgtttataataaaatcagaaaaactgaagaagggaaatatttggtacaaa
gattgtattccatcagctgatttttggttgcctcaggaggatgcaatattatgtgcagtt
gttcatgaatatggtcctaactggagctttgttagtgaaatcctttatagcatgactgct
gggggggcatatagggggagatttcgtcatcctgtccattgttgtgagaggttcagagaa
ttattccaaaaatacatcttgttctctatggacaatgcaaatcatgagaaaatcaactct
acaacctctggaaaggctcttaaagtaacagaggataacattcggatattgttagatgtt
gcttctgagcaggcaaatagagagttattactgcagaagcacttttttgcgttgctttct
tctgtctggaaggtggggtcacgtgttgaccgcaggcaaaatccacctgccacttgcaat
ggtctctatttcgatcagagttttttcacttcaattggccagcactcacaaaatccccca
aacaaaccctatgacaggatgacgtttgctaattcagcccagagcaagaagttaattgca
gctgcactggatgacatgagaagtaggccagagaatgacaaaatattcctctctaaccag
ggtgaagacatgccggtgagtgcagatcaggtggatataactctggagttcccgaaagag
gaaagtgattccttatcctcatttccatctgttataaagttatcaataaaaggggatgaa
gcgccaccgtctttaaagcacacaagagatgatcatcttaaaatgtgttattctgctgct
gagaatcgtttcagggatatagcaaaagcttgtgaagaagacagttctggatgggcttca
ccgacaaatgatgcaaggtctcgacctggttccaagatacaatcttctggaaagcaaagg
tcttccatctccgacattactaagctgtcaaggtcaaagaccaaaagagcttcagtggat
tctaatgaaatgcatcgccatcaggctgagttattgccgccagtgccatcgcttcatgaa
ctgacactggatctcccttcatccactatggacgaatttggatttaacatggatagcaat
ttcacctttgatttgaatgaggaaagttcattggaaagggaaaattttggagtggtcccc
catgattatgtagctgagttaatcccaggccttgatgattgtatagcattctctgaatat
actgatattagataa
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integrated database retrieval system
