Medicago truncatula (barrel medic): 25483891
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Entry
25483891 CDS
T01716
Name
(RefSeq) uncharacterized protein LOC25483891
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
25483891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
25483891
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25483891
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
25483891
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
25483891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
25483891
NCBI-ProteinID:
XP_013468061
UniProt:
A0A072VKY7
LinkDB
All DBs
Position
1:complement(30622098..30629121)
Genome browser
AA seq
1021 aa
AA seq
DB search
MEKPRRPFDRSKEPILKRPRLIENPDRAPNSSVRPIQQRKQVNSGISTLSSASRFRQNDR
ELESSDFDGGGYEPQPIRFEDLVAQYKSALAELTFNSKPMITNLTIIAGENQAGQKAIAA
TICANILEVPSEQKLPSLYLLDSIVKNIGQDYIKYFAAKLPEVFCKAYKQVDPSVRQSMK
HLFGTWKGVFPPQTLQIIDKELGFTPVINGSSSASTALRSDSQSKHSPHSIHVNPKYFER
QRLQQSSRTKGVVGDMTGAIANSNDDHEMTDRDLGVARAWNNQRTHRDPFNDSVPEKSIS
ASYEDNEHGSNLSRNLGMGIGRTDGRVAKLGHRNLSSKAAAGVSGTISGQRNSVGLKHSF
SNTEASMHQPIRNIAGIQRNVISSSWQNSEEEEYSWDEMNTGLTGHGVRNNLGNDAWTAD
DENLEAEDNHHQIRNVFRANVDREMPNRSQATEKKQSHAFQHHPSLSWQLQEQQSIDALD
RKPGHLEGSMLMSGSLPANASSSAARMGNRAFLPNARIGLAEIEGQQFHSVGSESPSGQS
PLRHRSPSPPSIDHSHLMKSLAMQDHPHTRKTSHFLGGLHSQYNEDSSPTLAPNIHVGDL
RRSSQLKDLQGPLPSSGFQPRYQQQLSSSHAEVTIETEKPPLSKVSLARKTSEQPATSHT
KAASVKNGTFSNMPTTSSLPSLLGARPSQSGGSSHAKIISSVSVNVSPSSPVLPKRPQRK
AGQPLRTSTLSPASSNVSSASAQSSGATNHTSNPLANLLSSLVAKGLISTVTETPAEVPP
ETLTRLEDHCDSFSTSSSMPVASLSGSAAVPIPSTKDELDDTAKTPMSLSESTSTDIRNV
IGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKFQEQFNRHLEWHATRERECTGLI
TASRWYLKSSDWVAGKAECPSENEFTDSLDSQDSETDKDQEDAMVLADENQCLCVLCGEL
FEDVYCHENSEWMFKAAVYMTNADIATEVGINDVISGRGPIIHTRCLSDYSLSSVVKTEL
D
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaccacgaagaccatttgatagatcaaaagaaccaattttaaagagacccaga
ttgatagaaaatccagatcgtgctccaaattcgagtgttcgaccaattcaacaaagaaaa
caagtgaattctgggatttcaacgttgtcttctgcttcacggttcaggcagaatgataga
gagttggaaagtagtgattttgatggtggtggttatgagccgcagccgattcggtttgag
gacctggtggctcagtataagagtgcacttgcagagcttactttcaattcgaagccgatg
attaccaacttgactataattgcaggggagaatcaagctggtcagaaggctattgctgcc
actatttgtgctaacattctagaggttcctagtgaacaaaagctgccatctctttatctc
ttagacagtattgttaagaatattgggcaggattacataaaatacttcgctgccaaacta
cccgaggtattttgcaaggcatacaaacaggtagatccttctgtccgtcaaagtatgaaa
catctttttggaacttggaaaggagtctttcctcctcagacccttcagattattgacaag
gaactgggcttcactccagtaatcaatggttcatcttctgcatctactgcactcaggagt
gattcacagtcaaagcattcgcctcacagtatccatgtgaatcccaagtattttgaaaga
cagcgtcttcagcagtccagcaggactaaaggagttgttggtgacatgactggagctatt
gcaaactcaaatgacgaccatgagatgactgatagagatttgggtgttgcacgagcatgg
aataatcagcgcactcatagagatccattcaatgattcagttccagaaaagagcatcagt
gcatcatatgaagacaatgaacatggttccaatctttcaaggaatttgggcatgggtatt
ggaagaactgatggtagggttgccaagttaggacacagaaatttgtccagcaaagctgct
gctggtgtttcagggaccatatctgggcaaagaaatagtgttggcctcaaacatagtttt
tcaaatactgaagcatctatgcatcagccaatacgaaacatagctggaatacagagaaat
gtgatatcaagtagctggcaaaattctgaggaagaggagtactcgtgggatgaaatgaac
acgggattgaccggtcatggtgtccgtaacaacttgggcaatgatgcttggaccgctgat
gatgagaatttggaagctgaagataaccaccaccaaatcagaaatgtttttagggcaaat
gttgatagagaaatgcccaatagatctcaagccactgaaaagaaacaatcacatgcattt
cagcatcatccatcattatcatggcaattgcaggagcagcaatcaattgatgcgttggat
aggaaaccgggtcacttggaaggatctatgttaatgtctggttccttaccagccaatgca
agttcttctgctgccaggatggggaatcgtgctttccttccaaatgcaagaataggattg
gcagaaattgagggacaacaatttcattctgtgggatctgaatccccttccgggcagtca
cctttgcgacatcggtctccatcgccaccaagtattgaccactcccatcttatgaaaagt
ttggctatgcaagaccatccccacactcgtaaaacatctcattttttgggaggtctgcac
agtcaatataatgaagattcttctcccacccttgctcctaatattcatgttggagacttg
cgaagatcatcgcaactaaaagacttgcagggtccattaccttcatcaggttttcagcca
aggtatcagcaacaactgagctcttcacacgctgaagtaactattgagactgagaagcca
cctttgtccaaagtttctctagccagaaaaacctcagagcagccagccacaagtcataca
aaagctgcaagtgtgaagaatggaacattttccaacatgccaactactagtagtcttcca
tctctattaggggctcggccttctcagtcaggtggttcttcccatgccaaaataatttca
tcagtgtccgtaaatgtctctccatcttcacctgttttgccgaaaagacctcaaagaaag
gctggacaaccactacggacatctactctatcaccagcttcctcgaatgttagcagtgcc
tcagcccagtcatcgggtgccaccaatcatacctcaaatccacttgcaaaccttttaagc
tcattagttgcaaagggtttgatatccacagtaactgagacaccagccgaggtgccgcct
gagacgctgactcgattggaagatcactgcgacagctttagtaccagtagctctatgcct
gttgcttcattgtctggttctgcagctgtccctatcccttctaccaaagatgagttagat
gatactgcgaaaacacctatgtcgttatctgaatcaaccagcacagatattagaaatgtc
attggttttgagtttaagcctaatgtaatcaggaagttgcatccatctgtaattagtgga
ttatttgatgattttccacatcattgcagcatttgtggccttaaacttaaattccaagaa
cagtttaacagacacttagagtggcatgccacaagagaaagagaatgcactggtttaatt
acggcatcaagatggtatctgaagtcaagtgactgggttgctggcaaagctgaatgtcca
tctgagaatgagtttactgattctttagattcacaagacagcgaaacagacaaagatcaa
gaggatgcaatggttctagcagatgaaaaccaatgcttgtgtgtgttgtgtggtgagcta
tttgaagatgtttactgtcatgaaaatagtgaatggatgttcaaagcggctgtttacatg
actaatgctgatatcgctactgaggtgggaatcaacgatgtgatttctggaaggggtccc
atcattcatacaagatgcttatcagattactcgttatcgagtgtcgtcaagacggaactg
gattaa
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integrated database retrieval system
