Medicago truncatula (barrel medic): 25483947
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Entry
25483947 CDS
T01716
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
25483947
Enzymes [BR:
mtr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
25483947
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
25483947
NCBI-ProteinID:
XP_013468123
UniProt:
A0A072VVN7
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Position
1:31537493..31542340
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AA seq
474 aa
AA seq
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MFQTTCIFLISLLCSFFNHGTSMLNLTLPGQHPDPESVALEVHRKVNVSMLRREMLSISN
KEFSTSCITGNPIDDCWKCDTDWANNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDA
VNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQ
YISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGSKDIWIDHCTLSRCK
DGLIDVVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGQQLVQRMPR
CRLGYIHVVNNDFTRWEMYAIGGSGGPTIFSQGNRYTAPEDVDAKQVTKRLDSGDSEWTS
WNWKSEGDVMANGAFFVDSGDKGEGSFQKAYSVDPKAVDRISTLTMAAGVLGVARDNNLG
MWTRAPNGGGDYSMSYSGEEEYTDDMSKSTMLLTHSLVTLFVPLLCFLSLTIDL
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaacaacctgcattttcctaatctcactactttgctcctttttcaaccatgga
acatcaatgcttaacctcacactccctggtcaacatccagaccctgaatctgttgcctta
gaagttcacaggaaagtgaatgtttcaatgttaagaagagaaatgctatcaatatcaaac
aaagagttttcaacatcatgtataacaggaaacccaatagacgattgttggaaatgtgac
acagattgggccaacaatcgtcaaaggttagcagattgtgcaatagggtttggacaaaat
gccaaaggaggaaaaggtggcaaattttacattgtcacagattcctcagacaatgatgct
gtgaatcctaaacctggtactttaagatatgcagttatacaaaatgaaccactttggatt
gtgtttccaagtaacatgatgattaagttgtctcaagagcttatttttaatagcttcaaa
accattgatggtcgtggtgctgatgttcatattgttggtggtggttgcatcactcttcag
tatataagtaatgttattatacataacattcatgttcatcattgtcatccctcaggtaac
actaacgtgcgttcgagtccagaacactatggatacagaacagaatcagacggagacgga
atctcaatattcggatcaaaagacatatggatagaccattgcacactctcacgttgcaaa
gacggtttaatagacgtcgttatgggttcaacagcaataacaatctccaacaaccatttc
tcacaccacaatgaggttatgttactaggccacagtgaccactacaaaccagactcagca
atgcaagtaacaatagcattcaaccattttggtcaacaattagttcagagaatgccacgt
tgcaggctcggatacatccacgtggtcaacaatgattttacgagatgggagatgtatgct
attggtggaagcgggggaccaactatttttagtcaaggtaaccggtatacggctcctgag
gatgttgatgcgaagcaagtgacgaagaggttggattctggtgacagcgaatggacttcg
tggaattggaaatctgaaggcgatgttatggcgaatggtgctttttttgttgattcaggt
gataagggtgaaggtagttttcagaaagcttatagtgttgatcctaaagctgttgatcgg
atttctactcttactatggctgctggtgttcttggtgttgctagggacaataatctagga
atgtggacaagagcaccaaacggtggtggtgattatagtatgtcatattctggagaagaa
gagtacacagatgacatgtcaaagagtacaatgttgttgacccattctcttgtaaccctt
tttgttccactcttatgtttcttgtccctaaccatagatctttaa
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