Medicago truncatula (barrel medic): 25484052
Help
Entry
25484052 CDS
T01716
Name
(RefSeq) uncharacterized protein LOC25484052 isoform X2
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25484052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mtr03000
]
25484052
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25484052
04121 Ubiquitin system [BR:
mtr04121
]
25484052
Enzymes [BR:
mtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
25484052
Transcription factors [BR:
mtr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
25484052
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25484052
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
25484052
Ubiquitin system [BR:
mtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
25484052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
Baculo_IE-1
RRM_1
Motif
Other DBs
NCBI-GeneID:
25484052
NCBI-ProteinID:
XP_013468255
UniProt:
A0A072VKG7
LinkDB
All DBs
Position
1:32726916..32735125
Genome browser
AA seq
908 aa
AA seq
DB search
MGDKGGKSCPICTEEMDLTDQHLKPCKCGYEICVWCWHHIMEMAHKDETEGRCPACRSPY
DKERIVAMAANCRRLVAEMNSKKKIPKLKPKSSDGRKHLTDVRVIQRNLVYIIGLPLHLA
DEDLLQRREYFGRYGKVLKVSISRTATGVIQHSANNICCVYITYSKESEAVRCIQSVHFF
VLEGRSLRACFGTTKYCHAWLRNVPCSNRDCLYLHDHGAHEDSFTKDELVLAFARSRVLQ
IIGATNNLNRPSGSVLPPPPDDPKHVSSATKVVSKSSLDNQIKESCSSNGAANSTALPAA
NSWARCVSGSLPKDTSSSSLRAGNLVNRKIEASIDSQALPGVACTERSIRDTKKSGEVKD
SSDVHSTNSVSVPSELNKHHIGGNSQTSSVGLGQEKAAPSVSTSFLEITGPHDLNTNKAV
SNRDVPGSCSELSSVSINSHVEDSYFTRDSDRILFTPNSTDPSSGKHLHQDNEYCKDHST
TPAFWEDIIVDDMLNKDCDQQQHCKGSDNLASRHYSPHCPQNLSQSSHHLKQENQICNQN
HLGKPSEYFTEPLGAGLEKTVKSEGTGSDVDNKVSSDVGENNIISNILSLELDAWEDSIV
KLLDESDEPYTSFKAPASRKIQDNNQSRFSFARQNDSLNKTSDLQQSFGVAGHDPKGNYA
SGGCNGNKDMFAVKHPYTFPSSNYVLSDKFDGSLSLAPSKFSMAKAHASSPPGFAMSDRI
PPGFSRGRVEQSCNSSVEHLQPQYAPPSVNISRIGNVEFKNPMVLDPSRGIVEERLNSTP
FNLGQTLLPQFNRNEDDARLKLLIQQQSTASQNLRLSDHIGNRFSPQSDAYRTNSRFLDQ
FQSNTPFSEQLHSQQFSSNILGSNNQWGSWNDSNYFSGLSMSEVLNNEIGGFNNFMPSYE
NIKFKHLN
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacaaaggagggaaatcatgtccgatatgtaccgaggagatggacctgactgat
cagcatctgaagccgtgcaaatgtggctatgagatctgtgtatggtgttggcatcatata
atggaaatggcacataaggatgaaactgaaggccgctgtcctgcctgccgttcaccttac
gacaaagaacgcattgtggcaatggcagctaactgtcgaagattggttgctgaaatgaat
tctaaaaagaaaataccgaagttaaagcctaaatcatcagatggaaggaaacatcttact
gatgttagagtcattcagcgcaacctcgtgtacataattggactgcctcttcaccttgca
gatgaagatctacttcaacgtagggagtactttggaaggtatggaaaggtgttgaaagtg
tctatatctcgtacagcaacgggcgttattcaacattctgcaaacaacatctgctgtgtg
tatataacttactcaaaagaatctgaagcagttcgatgtattcaatcagttcattttttt
gtattagaaggtagatcattgagggcttgttttggaaccacaaagtattgtcatgcatgg
ctcagaaatgtgccttgcagcaatagagattgtttgtatctacatgatcatggtgctcac
gaagatagctttaccaaagatgaattagtattagcatttgcaaggagtagggtcttacaa
atcattggtgctacaaataatttgaatcgtccttcagggagtgttttacctccaccacca
gatgatcctaaacatgtgtcatcagccaccaaagtagtttccaaaagttctttagataac
cagattaaagaatcctgttcaagcaatggagctgccaattcaacagcacttcctgcagcc
aactcttgggcaaggtgtgtatctggcagtcttccaaaggatactagttcatcttcatta
cgtgctggtaatctggtcaatagaaagattgaagcatctattgattcccaagccctgcca
ggggttgcttgcaccgaaaggtctattcgtgatacaaaaaaatcaggggaagttaaagac
agctctgacgtgcattccaccaatagtgtatctgtaccttcagagttgaacaaacatcac
attggtggaaattctcaaacatcttccgtgggccttggtcaagaaaaggctgcaccttct
gtgagtacaagcttcctggagatcaccggaccacatgatttgaatactaacaaggcagtt
tcaaatcgggatgtgcctggctcatgttcggagttatcatctgttagcatcaacagtcat
gttgaagattcatatttcacccgtgattcggacagaatactttttactcctaactcgacc
gatccctcttcagggaagcatttgcatcaagataatgagtattgtaaagatcattcaacc
acaccagctttttgggaagatataattgtggatgatatgctaaacaaagactgtgatcaa
cagcaacactgcaaaggcagcgataatttagcatccaggcattattcacctcattgtcct
cagaatctaagccaatcaagccatcatctgaagcaggaaaatcaaatttgtaaccagaat
catttggggaagccttctgaatattttactgaacccttgggggcaggattggagaagacc
gtgaagagtgagggtactggttccgatgttgataacaaggtttcttcagacgtcggagaa
aacaacatcatatctaacattttgtctttggaactagatgcatgggaagattcaatagtt
aagttgttggatgaaagtgatgagccatacacatccttcaaagcacctgcttcgcgcaaa
atccaagacaataatcagtccaggttttcctttgccagacaaaatgattccttgaataaa
acctctgatttgcagcaatcatttggggttgctggacatgatcctaaagggaattatgca
tctggtggttgtaatggaaacaaagacatgttcgctgtaaaacacccatacactttccca
tcaagcaattatgtgctatcagataaatttgatggaagtctgtctctggcgccctctaaa
ttttccatggcaaaagctcatgcttcaagtccacctgggtttgcaatgtcggacagaata
cctcctgggttttcacgcgggagagtagaacagagttgtaatagttctgttgaacatttg
cagccacagtatgctcctccatctgtaaatatcagcaggataggaaatgttgagttcaag
aatcctatggtattggaccctagtaggggaatagtggaagaaaggctgaatagtacacct
tttaacctggggcaaactttacttcctcaattcaatcgcaatgaagatgatgctagactt
aagctgttaatacaacaacaatctacagcttcgcagaatttaagactttcagatcatatt
ggaaataggttttcacctcaaagtgatgcttatagaactaattcgaggtttcttgatcaa
tttcagtctaacacaccattttctgaacaactgcattctcaacagttcagtagtaatatt
cttggttcaaataaccagtggggaagttggaatgattccaattatttcagtggcctgtct
atgtctgaagtattgaataatgaaatagggggattcaacaatttcatgcctagttatgag
aatatcaagtttaagcacctgaattga
DBGET
integrated database retrieval system
