Medicago truncatula (barrel medic): 25484620
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Entry
25484620 CDS
T01716
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25484620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25484620
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
25484620
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
25484620
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Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
CHASE5
Motif
Other DBs
NCBI-GeneID:
25484620
NCBI-ProteinID:
XP_024637539
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Position
1:complement(39312282..39315534)
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AA seq
195 aa
AA seq
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MEAERDMVTPGEVIGKTHDVKAGRGTYTSTHNNTVYASLTGFRHTIPPASDSPDQRPIVE
VTGHKAHGPVPEPGSVVIVRVTKVMTKIAEADIMCVGQKSVREKFTGVIRQQDVRATEID
KVDMHLSFRPGDIVKALVLSLGNARAYFLTTAKNELGVVSAESTAGATLVPISWTEMQCP
LSGQIEQRKVAKVAS
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagagcgagacatggtgacaccaggagaagtaataggtaaaacccacgacgtc
aaagccggaagaggaacctacacatcaactcacaataacacagtctacgcttctttaact
ggtttccgtcacaccatacctcctgcttcggactctcctgaccagagacccattgttgaa
gtcactggtcataaagctcatggacctgttcctgaacctggatctgtcgttattgttagg
gttactaaagtgatgactaaaattgctgaagctgatattatgtgtgttggtcagaagtct
gttcgtgaaaaatttactggcgtaattaggcaacaagatgttagggcaactgagattgat
aaagtagacatgcacttgtcttttcgtcctggtgacattgttaaagctcttgtgctttcc
cttggaaatgcacgggcttactttctgacaactgcaaagaatgagcttggcgttgtttcg
gcagaaagcactgctggtgcaactttggttccaataagttggactgagatgcagtgtcca
ctatctggtcaaattgaacaaagaaaggttgcaaaggttgcaagctga
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