Medicago truncatula (barrel medic): 25484780
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Entry
25484780 CDS
T01716
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
25484780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mtr04121
]
25484780
Ubiquitin system [BR:
mtr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
25484780
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
DUF7885
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
25484780
NCBI-ProteinID:
XP_013469221
UniProt:
A0A072VML5
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Position
1:complement(43740230..43743445)
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AA seq
589 aa
AA seq
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MQQQQKVAALSYSFPEEVLEHVFSFIDSTKDRGSISLVCKSWYEIERWCRRRVFVGNCYA
ITPAMVIKRFPKVRSITLKGKPHFADFNLVPEGWGGYVCPWIKAMAVAFPCLEEIKLKRM
VISDDCLDLIAKSFKNFKVLVLISCEGFTTDGLASIAANCRNLRELDLRESEVEDICGHW
LSHFPDSYTSLVSLNISCLANEVNFPALERLVSRCPNMHTLRLNRAAPLDKLANLLRGAP
QLVELGTGAYTSEMRPEVFTNLAAAFSGCKQMKGLSGFWDVLPSYLPAVYPVCSRLTSLN
LSYATIQSPDLIKLVGQCQSLQRLWVLDYIEDAGLDMLAASCKDLRELRVFPSDPFGLEA
NVALTEQGLVSVSEGCPKLHSVLYFCRQMTNAALNTIARNRPNMTRFRLCIIEPRTPDYL
TLQSLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEHIGTYAKKLEMLSVAFAGDSDLGLHH
VLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKLPRLNV
EVIDERGPPNLRPDSNPVEKLYIYRTISGPRLDMPGYVWTMEDDSAYLE
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcagcagaaagtagcagcgttatcgtactcattccccgaagaagttctcgaa
catgtcttctcattcatcgactcaaccaaagacagaggctcgatctctttagtatgcaag
tcatggtacgagatcgaacgctggtgtcgccggagagtcttcgtcggaaactgttacgct
atcacaccggcgatggtgataaaacggtttccgaaggtgagatctattacgctgaagggg
aagccgcactttgcggatttcaatttggtgccggaaggttggggtgggtacgtgtgtccg
tggatcaaagctatggcggttgcgtttccgtgtttggaagagattaagcttaagagaatg
gtgattagtgatgattgtttggatttgattgctaaatcgtttaagaatttcaaggttttg
gttcttatttcttgtgaaggtttcactactgatggacttgcttccattgccgccaattgc
aggaatttgagggagttggacctgcgggagagtgaagtggaggacatttgtggtcattgg
ctaagccattttcctgattcatacacatccttggtttctctgaacatctcttgcctagca
aacgaggtgaattttcctgcgctagagcgcctggttagtaggtgtcctaacatgcatact
ctccgcctcaatcgtgctgcaccccttgataagcttgcaaaccttctccgtggggctcca
cagctggttgagttaggcactggagcctacacatccgagatgcggccggaggtctttaca
aacctggctgcagcattttctgggtgcaagcaaatgaagggcttgtctggcttttgggac
gtgctcccatcatatcttcctgctgtctatcctgtatgctccaggctcacatcactgaac
ttgagttatgctacaatccaaagcccggatcttatcaagcttgtgggtcaatgccagagt
ttgcagcgcttatgggttctggattacatagaagatgctggccttgacatgcttgctgca
tcgtgtaaggatctgagggagttgagggtgtttccctctgacccatttgggttggaagca
aatgtagcgttgacagagcagggccttgtttctgtgtctgaaggttgccccaagctccat
tcagtcctatatttttgtcgtcaaatgaccaatgctgccttaaacacaatagctcggaac
aggcctaatatgactcgttttagattatgtattattgagcctcgaactcctgactatctc
acccttcaatctctggattctggttttggagctattgttgaacattgtaaggatcttcag
cgcctttccctttcagggcttctcacagaccgtgtttttgagcatattgggacttatgcg
aagaagcttgagatgctttctgtggcttttgctggagatagtgatctgggactccatcac
gtgctgtctgggtgtgacaaccttaggaagctggagatcagggactgcccctttggtgac
aaagctcttttagccaacgctgcaaagttggagacaatgcgatccctttggatgtcctct
tgctcagtgagttatggagcatgtaaactgttgggtcagaagttgcctaggctcaatgtt
gaagtcattgatgaaagaggacctccaaatttaaggccagatagtaatcctgtggagaaa
ctatatatatacaggactatttctgggcctagattggacatgcctggttatgtatggaca
atggaagatgattctgcatatcttgaatga
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