Medicago truncatula (barrel medic): 25485016
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Entry
25485016 CDS
T01716
Name
(RefSeq) cleavage stimulating factor 64
KO
K14407
cleavage stimulation factor subunit 2
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
25485016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25485016
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
25485016
U7-dependent histone pre-mRNA processing factors
25485016
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GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
RRM_10
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
25485016
NCBI-ProteinID:
XP_013469568
UniProt:
A0A072VPL6
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Position
1:complement(47512262..47518648)
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AA seq
572 aa
AA seq
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MVVKRKKIGGATLHLLPLDFMAAPQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRL
VTDRETGKPKGYGFCEYTDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNKDQGRG
GPGMTTNADPQKQVGIPAVQGESTQAAQHQPMGLHIAVTAAAVMTAALGGAQTGIPSNQN
GLQSQQALANDPLTLHLAKMSRSQLSEIISELKGMATHNKDLSRQLLLSRPQLPKALFQA
QIMLGMVNPQMLQMPNLRQVSDQPSQSLMNEGHLGQTQQTLVPTVAGLPPYGQSKLQFGL
TPYIQEGQVSTLPHNPSVPSQLTANPKPPLQPRIPPQHHQSNHFVQPGAGQNNLILPSIR
PPTTGNFSARPPFQQANSTVVNQQPHASFLQQPVRVGSSTVSHNIHMVRPDASFQAGPSM
PSGVSQLFSKEGDRPSNALEDWAKSSSKYSNISFGVENTGVVHDNPESFTRPSKLTRLND
GRGLSAGTSDVPISNGSSHVLGSSSLPVPAVPKADVRHSDQQSSQLPSDVESVLLQQVLN
LTPEQLSSLPPEQQQQVIQLQQALKRDQMQHS
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggtagtaaagaggaagaagattggaggagcaacgcttcaccttcttcctctcgatttc
atggctgctcctcagtcccaacatcgcactgtctttgttgggaacataccatatgatgct
acagaggaacagcttaaggaaatttgtcgggaggttggtcctgttatcagttttagatta
gttactgatagagaaactgggaaacctaagggttacggattctgtgagtatacggatgaa
gaaacggcgttaagtgctcgtaggaatcttcagggttatgaaattaatggacgtcaatta
cgtgttgatttcgcggagaatgataaagggaatgatagaaataaagatcagggtcgcggg
ggaccaggaatgacaacaaatgcagatcctcagaaacaagtaggcatcccagctgttcaa
ggggaatccactcaagcagctcaacatcaacctatgggtcttcatattgccgtaacagct
gcagctgtcatgactgcagctctaggtggtgctcagactggcatcccgtcaaatcaaaat
ggtttgcagagtcagcaagcattagcaaatgatcctttaactttgcatctggctaagatg
tccaggagtcagctatctgagataatctcagagcttaagggaatggctacacacaacaag
gacttgtctcgccagctgttgctttcaaggccacagttgcctaaggctctttttcaggct
cagataatgctagggatggtcaacccccaaatgttacaaatgccaaaccttagacaagtt
tcagatcaaccctcgcagtctttaatgaatgaaggccaccttggtcagactcaacaaaca
ttggttccgactgtggctggtctacctccttatggacagagcaagttgcagtttggcttg
acaccttatattcaagaaggccaagtcagcactctccctcataacccttcggttcctagt
caattgaccgcaaatccaaagcctcctctgcagcccagaattccccctcaacatcatcaa
agcaaccattttgtacagcctggagcagggcagaataatttaatacttccttccatacgt
cccccaactacgggcaatttttctgctaggcctccatttcaacaggcaaattcaactgtc
gtgaaccagcaaccgcatgcctcatttctacaacaaccagtacgtgttggaagctcaact
gtctcacataatattcatatggttcgtccagatgcaagctttcaggctggtccctccatg
ccatctggtgtttctcagttatttagcaaggaaggtgatagaccttccaacgctcttgag
gattgggccaagagtagtagtaaatattccaacatatctttcggagtagagaatacaggc
gtggttcatgataatccagaatcctttactcgaccatcaaagctcactagattgaatgat
ggaaggggtctctctgctgggacttcagacgtacctatttccaacggatcatcccatgtt
ctcggaagtagctcattacctgtacctgcagttcctaaagcagatgtgcggcactctgat
caacaatcttcacagcttccatctgatgtggagtctgttttactgcaacaagtgttgaat
ctaacaccagagcaattgagttctttgccaccagagcagcaacaacaggtcattcagctc
caacaagcgcttaagcgagatcagatgcagcactcataa
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