Medicago truncatula (barrel medic): 25485080
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Entry
25485080 CDS
T01716
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
25485080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25485080
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
25485080
SSDB
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Paralog
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
25485080
NCBI-ProteinID:
XP_013469683
UniProt:
A0A072VPX8
I3SXB4
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All DBs
Position
1:complement(49258581..49263378)
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AA seq
200 aa
AA seq
DB search
MIPSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPGLVPDWQIGECVAIWW
RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFQFKMITN
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgataccctctcaggtagtaaacacatacccattatcgagctacaccttcggtactaag
gagcctaagatggagaaagacacctctgtcgctgatcgtcttgctcgtatgaaagtcaat
tatatgaaagaaggaatgaggaccagcgtggaaggaattttactggtacaagaacacaat
catcctcatatccttcttctgcaaattgggaacacattttgcaaactcccaggcggccgt
ctcaagccaggggagaatgaaattgagggcttgaagagaaaattgactagcaagcttggt
gctaattcacccggccttgtacctgactggcagataggtgaatgtgttgcaatctggtgg
aggccaaattttgaaactataatgtatccatactgtcctccgcatataacaaaacccaag
gagtgcaagaagcttttcctcgttcacttatctgaaagggaatactttgctgtacccaaa
aacttgaaactgcttgctgttccattgttcgaactctatgacaatgtccagagatatgga
ccagtcatatccactattcctcagcaactttccagattccagttcaaaatgatcactaac
tga
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integrated database retrieval system
