Medicago truncatula (barrel medic): 25485081
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Entry
25485081 CDS
T01716
Name
(RefSeq) DNA mismatch repair protein MSH3 isoform X3
KO
K08736
DNA mismatch repair protein MSH3
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
25485081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtr03400
]
25485081
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
25485081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
25485081
NCBI-ProteinID:
XP_013469685
UniProt:
A0A072VPI7
LinkDB
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Position
1:49269093..49278828
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AA seq
1072 aa
AA seq
DB search
MGKQKQQVLSRFFAPKPKTPSSTTDPPPPPPSSSPKITTTVNFSPSKRRLISQLTASPNK
QPKLSSPIPSLHQRFLQKLLEPSNPTPQPPSSSKPVKFTPLEHQVVELKAKYPDVLLMIE
VGYKYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVKQTE
TAAIKSHGLNRAGPFCRGLSGLYTKATLEAAHDMGGGEDGGGTVNNYLLCVVEKSILGEK
KFNCGVEGGFDVRIGIVGVEISTGDVVYGEFDDNFLRSELEAVVVSLSPAELLLGDPLSK
QTEKLLLAFAGPSSNARVERASRDCFTNGGAFAEVMTLYENTHADSPDSMQNNELAELGS
QQMVVKEVMNLPELAVEALALTIRHLKGFGFERILCSGALRPFVSNTEMTLSANTLQQLE
VLQNNSDGSASGSLLQVMNHTLTIFGSRLLKHWVSHPLCDQTLIAARLNAVSEIAESMGT
CNGMKNLGRFEEDSDVAIVQPELAHILSLVLTSLGRAPDIQRGITRIFHRTATPSEFIAI
IQAILSAGKRLQQLNIGEGDNNNNNKLRSDLLKKLISTASSTSVIGNAAKMLSSLNEDSA
YQGDWTNMIIATEEQFPEVITARKAFQMAVEHLDSLIDLYRKRLGMRKLEYMSVSGVTHL
IELSTDVKVPLNWVKVNSTKKTIRYHPPEVVTALDELSLAKEKLTVACRAAWDSFLRDFS
KHYAEFQASVQALASLDCLHSLAILSRNKGYVRPVFVDDHEPVQMQICSGRHPVLESILQ
NNFVPNDTSMHADREYCQIVTGPNMGGKSCYVRQASLIALMAQVGSFVPASSAKLHVLDG
IYTRMGASDSIQQGRSTFLEELSETSHILHRCTGRSLVILDELGRGTSTHDGMAIAYATL
HYLLKQKKSLVLFVTHYPKIASLETEFPGSVAAYHMSHLTSHDDVSKNSNDHEDITYLYK
LVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHGRSGKELLDEPVIHQE
QELHHCPHQEFGRAYKEFYSNLKATILDDDDHAKSFQLLENARSIAKTLVSR
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagcaaaagcaacaagtactttcccgtttcttcgctccaaaacccaaaacccct
tcatcaaccaccgacccaccaccaccgccaccatcttcctctcccaaaatcaccaccacc
gtcaatttctcaccatccaaacgccgcttaatctctcaactcacagcatcccctaacaaa
caacccaaactctcttcacctattccctctctccaccaacgcttcctccagaagcttcta
gaaccttctaatccaaccccacaacctccttcatcttccaaacctgtaaaatttactcct
ttagagcatcaggtagtggaactcaaagctaagtaccctgatgttcttttaatgattgaa
gttggttacaagtatcgatttttcggcgaagatgctgagaatgctgcaagggttttgggt
atttatgctcatatggatcataattttttaactgctagcataccaacttttcgattaaat
gtccatgtgaggaggcttgttagtgcagggtataaagttggcgttgttaagcagactgaa
actgctgctattaagtcccatggtttgaatcgggccggtccattttgtcgaggtttgtca
gggttgtatacgaaggccacacttgaggcggcgcatgatatggggggaggcgaagatggg
ggtgggaccgtgaataattatttgctgtgtgttgtggaaaagagtattttgggagagaaa
aaatttaattgtggtgtggaaggtggttttgatgtgaggattgggattgttggtgtggag
atatcgacgggagatgttgtttatggagagtttgatgataattttttgaggagtgaactt
gaggctgttgttgttagcttgtctcctgctgagttgcttcttggagaccctctttcaaaa
caaactgagaagttattactggcttttgctggaccctcctcaaatgctcgtgtggagcgt
gcctcacgagattgcttcaccaacggaggcgcttttgctgaagttatgacattgtatgag
aacacgcatgctgacagtccagattcaatgcaaaacaatgaattggctgagcttggaagt
cagcagatggtagtgaaggaggtgatgaacctgcctgagttggctgtcgaagctttggcc
ttaactattcgccatttgaagggattcggttttgaaagaattctgtgctcaggtgcttta
aggcccttcgtaagcaatacagaaatgactctctcagctaatacacttcaacaactggag
gttttacaaaataacagtgatggatctgcgagtggttccttgctgcaagttatgaatcac
actcttactatattcggttccaggcttcttaagcattgggtatcacacccattgtgtgat
caaaccttgattgctgctcgtcttaatgctgtatctgaaatcgcagagtccatgggaacc
tgtaatggtatgaagaatcttggacgctttgaggaagattctgatgtagcaattgtgcag
cctgagttagcacacatactttcattggttttgacatccctgggccgggcacctgatata
cagcgtgggattacaagaattttccatcgcactgctaccccatctgagtttattgccatt
attcaagctattttatctgctggaaaacggcttcagcaacttaacataggagagggtgat
aataataacaataataaattgcgctctgatttgttaaagaagttaatttcaactgcgtcc
tctacaagtgttattggtaatgctgcaaaaatgctgtcatctttaaatgaagactctgct
taccaaggagattggactaatatgatcattgcaactgaggagcaatttccagaggtaatt
acagctcgaaaggcttttcagatggcagtggaacacttagattcattgattgacttgtac
cgcaaacggctcggaatgcggaaattggaatatatgtctgtttctggtgtaacccacttg
atagagttatcaactgatgtaaaagtgcctttaaattgggttaaagtaaatagcacaaag
aaaacaattcggtatcaccctcctgaagtagtgacagcattggatgagttatcattagcg
aaagagaagcttactgttgcctgccgagctgcatgggatagctttctgagggacttcagt
aaacactatgctgagttccaagcttctgttcaagcactagcttctctagattgcctgcac
tcacttgccattctttcaagaaataagggttatgtccgccctgtttttgtagatgatcat
gagcctgttcagatgcaaatttgttctggtagacatccagttttggagtctatcttacaa
aataattttgtcccaaatgatacaagcatgcacgccgatagagagtactgtcagattgtc
actggacccaatatggggggaaaaagttgctatgttcgccaagcatctctgatcgctctc
atggctcaggttggttcctttgtaccagcatcatcagcaaaactgcatgtactggacgga
atttacacccggatgggcgcttctgacagtattcagcaagggagaagcaccttcctagaa
gaattgagcgagacttcacacatacttcatagatgtacaggacgttcgctggttatactt
gatgagcttgggagaggtacaagtacgcatgatggcatggcaattgcttatgcgacatta
cattatcttctgaagcagaagaaaagtttggtcctatttgtcactcattatccaaagatt
gcaagcctggaaactgaatttccaggctctgtagcagcatatcacatgtcacatctgacc
tcacacgatgatgtgagtaaaaactccaacgatcatgaagacatcacttatttatataaa
ctcgtacctggtgtttctgagagaagttttggttttaaggttgcccagcttgcacagtta
ccgtcgcattgcattagccgagctattgtcatggcttccaaattagaagcactagtaaac
agcagaatacatggtagatcaggaaaagagttgttggatgaacctgttatccatcaagag
caagaattacaccactgtcctcatcaagaatttggtagagcatataaagaattctattca
aacttaaaagctacaatattagatgatgatgaccatgcaaaaagctttcaacttttagag
aatgcaagaagcattgcaaagacattagttagcagatga
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