Medicago truncatula (barrel medic): 25485314
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Entry
25485314 CDS
T01716
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25485314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
25485314
Spliceosome [BR:
mtr03041
]
Complex A
U1 snRNP components
U1 related factors
25485314
Complex B
25485314
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
SMODS
Motif
Other DBs
NCBI-GeneID:
25485314
NCBI-ProteinID:
XP_013469962
UniProt:
A0A072W136
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All DBs
Position
1:51643144..51657964
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AA seq
1008 aa
AA seq
DB search
MSNNNPQYPGLQPIRPPIPGSMDPQRNFGQLMPVQFRPVVPAPPPPQQQQFVPMPAQHYH
QQFNVGMPPQNQQPQFSQPIQQFQPRVGQQLPLPSQMIPMPVPRPNMQTSSESMMPQPDS
QAPNGYTPGLGGPGMSISSSFMFASSSYGQAPQNNFNSTGQYQPVPQIQPPTGSSSQSIT
PGTAPQSNGEQPTVTTVMPSATIIQPHLAKGSSSDWIEHTSATGRRFYYNKRTKLSSWEK
PFELMTPIERVDASTNWKEYTSPDGRKYYYNKITKESKWLIPEELKFAREQVGKAMVNGT
LPEPLLTPCTQPSANSVTEAMPSADNSSVPAQGEQTSPISVAPVVTTSPSNLQSEITSGS
RDSPTAITITGTEVDEPEVPVNIITPSDSSLGSDKAFVSDINTAATPMNDVSNVSAQDTV
GSADGVLGEDKEDGKIDSIGENVNDVASETKSVEPESFVYANKMEAKDAFKALLESVNVG
SDWNWERAMRLIINDKRYGALKSLGERKQAFNEYLSQRKKQEAEEKRMKHKKAREDFRKM
LEESTELTSSIRYSKAIAIFENDDRFKAVERERDRKDMIESFLEELLNKERAKVLEERKR
NTVEYRKFLESCDFIKANTQYRKVQDRLEADERCSQLEKIDRLEIFQDYLRDLEKEEEEQ
KKIQKEELRKTERKNRDEFRKLMDEHSTSGILTAKTHWRDYHSQVKDLPAYLAVASNTSG
STPKELFEDVVEELEKQYQEEKSQIKDAVKSAKITLSSTWTFEDFKSALSEHISSPPISD
SNLKLVFDEVLERAREKEEKEAKKRKRLADAFFHLLYSTKDITESSKWEDFRQLLEDSQE
FRSVGDVSLSKQMFEVYVAQLKEEAKENERKRKEERAKKEKDREERERRKSKQRREKEGG
RERWKEETHKRDRTDSDSVDLNEVHISKENKRKQHQSPDHVSLETDKERTKKSHGHSSDR
KKSRRHGSGHESDEGRHKRHRRDHRDSHREGGQLEDGEFGNDVVMDRW
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgtccaataataatccacaatatccaggtttacagccaattcggcctccgatccccggt
tcaatggatcctcagcgcaatttcggtcaactcatgcctgtccaatttcgccccgttgtt
cctgcaccgccgccgccgcagcaacaacaatttgttccaatgccagctcaacattaccac
caacagtttaacgttggaatgccgcctcaaaatcaacagccgcaattttctcaaccaatt
caacagtttcagccgagagttggtcagcaattaccactcccatcccagatgattccaatg
ccggttccgaggccgaatatgcaaacttcgtctgaatcaatgatgccacaacctgattct
caagctccgaatggatacacaccgggtttaggtggcccgggaatgtcaatttcgtcatcg
tttatgtttgcatcatcctcttacggtcaagcgccacaaaataattttaattctaccggc
caataccaacccgttccccaaatccaacctcccactggttcatcatcccaaagtattact
cctggtacagctcctcagagcaacggcgagcaacccacagttacaactgtcatgccttcg
gctacaatcatccagccacaccttgccaagggtagctcctcagattggatcgagcacact
tctgctactggaagaagattttactacaataagaggactaaattatctagctgggagaaa
ccttttgaattgatgacacctattgagagggtagacgcatcaacaaactggaaggagtat
acaagtcctgatggaagaaagtattactacaacaagatcactaaggaatcaaagtggtta
attcccgaggaactcaagtttgcccgtgagcaagttggaaaggcaatggtcaacggaaca
cttcctgagccattactgactccctgtactcaaccctctgcaaattctgtgactgaagca
atgcctagtgcagataattcatctgtacctgctcaaggcgaacaaacaagtcctatttca
gttgcaccagttgttactacgtccccaagtaatttgcaatctgagataacttctggatca
cgcgattctcctactgccatcactataactggaacagaagtggatgaacccgaggtgccc
gtaaatattatcactccatcagattccagtttgggaagtgataaagcttttgtttctgat
attaatactgctgcaacaccaatgaatgacgtcagtaacgtttcagctcaagatactgta
ggttctgctgatggagttctaggagaagataaagaagatggaaaaattgattcaataggg
gagaacgttaatgatgtggcctcagaaacaaagtcagttgagccagaatcctttgtttat
gcgaataagatggaagctaaagatgcattcaaagcactcttggagtctgtaaatgttgga
tctgactggaattgggaacgggctatgcgattaataattaatgacaaaaggtatggtgcc
ttaaaatctctcggagaaaggaagcaagctttcaatgagtacttaagtcaaaggaaaaaa
caggaagcagaggaaaagcgtatgaaacacaaaaaagcacgggaggattttagaaaaatg
ttggaagagtccacggagttgacttcatccattagatacagcaaagcaatagctattttt
gaaaatgatgaccgtttcaaggctgtcgagcgagaaagagatcgcaaggatatgattgag
agctttttggaggaacttttaaacaaggaacgggcgaaagtactagaggaacggaagcgt
aatacagttgaatacaggaaatttttggaatcttgtgactttataaaggctaatacgcag
tatcgaaaagttcaagaccgcttagaggctgatgaaagatgctctcagcttgagaaaatt
gatcgcttggaaatattccaagattatttgcgtgatttagagaaggaagaggaagagcag
aaaaagatacagaaggaagaattgagaaagacggaacgtaaaaaccgtgatgaattccgc
aaattgatggatgaacattccacttcaggcattcttactgcaaaaactcactggcgtgat
tatcattcacaggtaaaagacttacccgcctatttagcagtggcatcaaacacctcaggt
tcaaccccaaaagaattgtttgaagacgttgttgaagagctggagaaacaatatcaagaa
gaaaagagtcaaataaaagatgcagtgaagtcggcgaagatcacgttgtcatcaacctgg
acttttgaagacttcaaatcagctttatcagaacacattagctctccacccatatctgat
tccaacctaaagttagtgtttgacgaggtactggaacgagctagggagaaggaggagaag
gaagctaagaagcgtaaacgtctcgcagatgctttcttccatttactatattctaccaag
gacattaccgagtcttcaaagtgggaggactttaggcaacttcttgaagatagccaagag
ttcagatctgttggagatgtgagcctcagcaagcaaatgtttgaggtttatgttgcacaa
ctgaaagaagaggcaaaggagaatgagcggaaacggaaagaggaaagggcaaagaaggag
aaagatagggaggaaagagaaagaaggaaatcgaagcagagaagggaaaaagagggaggg
cgtgaaagatggaaagaggagacacataagagggatagaacagacagtgacagtgtggac
ttaaatgaggtccacatctctaaagaaaacaaaaggaagcagcatcaaagtccggaccat
gtttctctcgaaactgataaagagagaaccaagaaatctcacggtcacagcagcgaccgc
aagaaatccagacggcatggttctggtcatgaatccgatgaaggtcggcacaagagacac
aggagagaccatcgtgattctcatagagaaggtgggcaacttgaagatggagaatttggc
aatgatgtggttatggatcgatggtaa
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