Medicago truncatula (barrel medic): 25485451
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Entry
25485451 CDS
T01716
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25485451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25485451
03012 Translation factors [BR:
mtr03012
]
25485451
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
25485451
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
25485451
Translation factors [BR:
mtr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
25485451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
NPHP3_N
AAA_23
Dicer_dimer
ATPase
AAA_11
PhoH
ResIII
T2SSE
Motif
Other DBs
NCBI-GeneID:
25485451
NCBI-ProteinID:
XP_024627347
LinkDB
All DBs
Position
1:53032806..53050596
Genome browser
AA seq
1222 aa
AA seq
DB search
MSIVHHLVFHSSFFRHTDTQTHAHIESSHHNNIQHDAVLPNLALHASNSIIIIISQKTLN
LSFHHLAMKDRPSLSSHGAIYVPPHHRLRSVVTSASPAPISVKLSQNQPPPPTTLQTPLS
NNNANSRFVSAYDDVISEDCSNHQLHVPSLPSGYLNDNMNEWKRKLMMLLNDKSKQEVIS
REKKDRRDFDDIAVLATRMGLYSHKYSKVVVFSKAPLPNYRYDLDERRPQREVSMPLTVS
KRVGAYFEEYLSQKSRVKKSFSDSSFARSSSDGSLGTDEGFFVQPEPLASSKSVVEKIAR
QISFQMRDQQQAWQESPEGRKMLEFRSNLPAYKEKEAILSVISKNQVVIISGETGCGKTT
QIPQFILESEIESVHGAACNIICTQPRRISAMSVSERVAFERGEKLGESVGYKVRLEGMK
GKDTHLLFCTTGILLRRLLADRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPHRPELK
LILMSATLDAELFSLYFNGAPIVNILGFTHPVRTLFLENILEITGYRLTPSNQIDDYGQE
RAWKMNKQAPRKRKSQIASAVEDAIRSADFREYSLQTQESLSCWNPDCIGFSLIEYILCD
ICENKRPGAVLVFMTGWDDISSLKEKLQTHYVLGDPKRVLLLTCHGSMASSEQKLIFEEP
EDGVRKVVLATNIAETSITVDDVVFVLDCGKAKETSYDALNNTPCLLPTWISKASAHQRR
GRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSISDFLSRALQ
SPEILAVQNAVEYLKIIGALDESENLTTLGSYLTMLPMEPKLGKMLILGAIFNCLDPILT
VVAGLSVRDPFLSPLDKKDLAEAAKSQYTGAYSDHLALVRAYAGWKEAEIDLVGYEYCWK
NFLSFQSMKAIDALRREFIGLLTDIGLVDSNTTSCDTWSYDVNLIRAVICYGLYPGICSV
VHNEKSFALKTMEDGQVLLYSNSVNARETRIPYPWLVFNEKIKVNSVFLRDSTAVSDSMM
LLFGGSLSKGDADNHLKMLGGYLEFFMEPTVADMYQSIRRELDDFIQSKLLSPRMSVHSH
HNLLSAVRFLISHDSCEGRFVFGRQVLKPSNISVMAPHPASLVPRTESGPGGDNSKSQLQ
TLLTRAGYAAPVYKTKQLKNNQFRATVEFNGVEIMGQPCSNKKSAEKDAAAEALQWLMGK
QAGCEYIDHMSMFLKKSKKDHN
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgagcatagttcatcatcttgtttttcacagttcattcttccgtcacactgacacacaa
acacacgcacacatagaatcgtctcatcacaacaatatccagcacgacgccgttttaccg
aaccttgcattgcatgcttccaactccatcatcatcatcatttcccaaaaaaccctaaac
ctctcatttcatcatctcgccatgaaggaccgcccttcgctgtcctcccatggcgccatc
tatgttcctcctcaccatcgtctccgctccgtcgttacctccgcctcccccgctcccatt
tccgtcaaactcagccaaaatcaaccaccgccacctaccactctccaaacccccttatcc
aacaacaatgcaaattctcgcttcgtttctgcttacgacgacgtcatttccgaggattgc
tccaaccatcaacttcacgttccttccctaccgagtggttacctcaatgataacatgaat
gaatggaagaggaaattaatgatgctgttgaatgataagagtaagcaagaggtgatttcg
agggagaaaaaagacaggcgtgattttgacgacattgcagttttggcaactagaatggga
ctgtatagccataagtattcgaaggttgttgtctttagtaaggcgccacttccaaattac
agatatgatttggacgaaagacggcctcagagagaggtgagcatgcctctcaccgtaagc
aagcgggttggtgcatattttgaggaataccttagccaaaagtctagggtaaagaaaagc
ttttcagattcgtcgtttgcaagatcaagcagtgatggcagtcttggtacagatgaaggg
ttttttgtgcaacctgagccactagcatccagtaagtctgttgtggagaaaattgcccgg
cagataagctttcaaatgcgtgatcaacaacaagcctggcaggaatcacctgaaggaaga
aaaatgctagaatttcgtagcaatctccctgcttataaagagaaagaagcaatattatca
gtcatatcaaagaatcaggtagtcatcatttcaggtgaaacaggttgtggcaagacaaca
caaattccacaatttattttagagtctgagatagaatcagttcatggagctgcttgtaat
attatatgcacacagccaagacgaatttcagccatgtctgtttcggaaagggttgctttt
gagagaggggagaaattgggcgaatctgttggatataaagttcgactggagggaatgaaa
gggaaggatacccatcttctcttttgcactacgggcatcttattaagaagattactggct
gatagaaacctcaaaggcgtaactcatgttattgtggatgaaattcatgaacgtgggatg
aatgaagattttctgcttattgtccttaaagaactccttccccatcggcccgaactcaaa
ctgattttgatgagtgctaccctagatgcagagctcttctctttgtactttaatggggct
ccaatagtgaacatactgggctttacacaccctgttagaactctttttttggagaacatt
cttgaaatcacgggctatcgattgactccttctaatcaaattgatgattatggtcaagaa
agggcttggaaaatgaacaaacaggccccaagaaagaggaaaagccaaattgcttctgct
gtagaggatgctattagatctgctgacttcagagagtacagccttcagacacaggagtct
ttgtcatgctggaatcctgactgtattggttttagtctcatagaatatatcctgtgtgat
atttgtgagaataaaaggcctggtgctgttttggttttcatgactgggtgggatgatata
agctctctgaaagagaagctccaaacacattatgtcttaggagatccgaagcgtgttttg
ttgcttacatgtcatggctcaatggctagctcagagcaaaagttaatatttgaagagcct
gaagatggagtaagaaaagtagtgctagcaacaaatattgctgaaacgagtatcacagta
gatgatgttgtttttgttctggactgtggaaaagcaaaagaaacatcatatgatgcactg
aataacacaccttgtttgcttcctacatggatctctaaggcttctgctcatcaaagaaga
ggaagagccggtcgtgtccaacctggggagtgttaccatctttatcctagatgtgtatat
gatgcttttgcagagtatcaattgccagaaattttgagaacacctttgcagtctctctgt
ttacaaatcaaaagtctaagacttggaagtatatctgatttcttgtccagggctttgcag
tctcctgagatactggcggtacaaaatgcagttgaatatttaaaaataattggggctttg
gatgagagtgagaatctgactactctaggaagctatttgacaatgcttcctatggaaccc
aaacttggaaagatgcttatattaggggctatcttcaattgcttggatcctatattaact
gttgttgctggacttagcgtaagagatccttttctttcaccactggataaaaaagatctt
gcagaggcagcaaaatctcaatatacgggtgcatacagtgaccacctagcacttgtacgt
gcctatgcgggttggaaagaggctgagattgacctggttggatatgaatattgctggaaa
aactttctgtcattccaatccatgaaggctattgatgctcttcggagggaattcataggg
ctgcttacggatattggattagttgatagcaacacaaccagctgtgacacatggagctat
gatgtgaatcttatccgggcagttatttgctatggtctataccctggaatttgttctgtg
gtgcataatgagaagtcatttgctttgaaaacaatggaggatggtcaagttctcttgtac
tcgaattcggtcaatgctcgagaaacaagaattccatatccgtggttagtttttaatgag
aagataaaagtgaactccgtttttctccgtgactcaacagctgtctctgattcaatgatg
cttttgtttggtggaagcttatcaaaaggagatgctgataatcatttaaaaatgttagga
ggatatctggagtttttcatggaacctactgttgctgatatgtatcaaagtataaggaga
gaacttgatgacttcattcagagcaaactgctttctccaagaatgagcgtacactcgcat
cataacctcctatctgcggtacgttttctgatttcccacgactcatgtgaaggaagattt
gtatttggtcgtcaggtccttaaaccatcaaatatatctgtgatggccccacacccagca
tccttggttccaagaacagagagtggacctgggggtgataattctaaaagtcagctccaa
actttgcttacaagagcaggatatgctgctcctgtctacaagactaaacagttgaagaac
aaccagtttcgggccacagttgagttcaatggagtggagataatgggccaaccttgcagc
aataagaagagtgcagagaaagatgccgcagctgaagctctgcaatggttgatgggcaag
caagctggctgtgagtatatcgatcacatgtcaatgtttctcaaaaaaagtaagaaggat
cacaattaa
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