Medicago truncatula (barrel medic): 25486045
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Entry
25486045 CDS
T01716
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X2
KO
K10683
BRCA1-associated RING domain protein 1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
25486045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25486045
04121 Ubiquitin system [BR:
mtr04121
]
25486045
03036 Chromosome and associated proteins [BR:
mtr03036
]
25486045
03400 DNA repair and recombination proteins [BR:
mtr03400
]
25486045
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
25486045
Ubiquitin system [BR:
mtr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
25486045
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
25486045
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
25486045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-C3HC4_2
BRCT
BRCT_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_UBOX
zf-HC5HC2H_2
zf-RING_6
zf-RING_5
zf-RING_10
PHD_NSD
RTT107_BRCT_5
zf-Nse
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
25486045
NCBI-ProteinID:
XP_013462656
UniProt:
A0A072V4U2
LinkDB
All DBs
Position
2:6074288..6080099
Genome browser
AA seq
1006 aa
AA seq
DB search
MGDLEKMGRELKCPICLGLLHSAVSLTCNHLFCNSCIFKSMKSASSCPVCKIPFTRREVR
PAPHIDNLVTIYKNMEAASGINLFGTQNPTATKSPDDEMQGGGDAESGEKGIGGTHENHA
EEEKTPTRKRSRKKLKTSTISSEKLKTSRKSPASNRAKPSFPAKKRVQVPQDILSETPLR
NLKTGGSITQVNKEGTQEASIKRNVSAIGSEKRDQVKEPFFWLREEQDGERLSAQTDEDQ
IIEGPTPIPPSFSDLKDADDESPLKQAPSDEVQNKPSVDLFDSEFFEWTQKPCSPELFSS
PIKTQVEDTDEIDENIEEWVAALQEKQTSVDACNTNFENPNGNQLAEALLPGLSSEIRSS
DDLNGKKNSTKRSRKAREKSRQDHIRELNCLSDEINMDADITSKVIEEQSLDYKHKASNL
KKSNKRGKKVSFVTSTESTPPIACTVSNILGVQNIGDRKTAKNSYTSESKQDNEMQFPEK
IAGKRQVRRSGKQRLDVVDDPPEDLTSVQNQCKELAGSASSSLRLQMDSNRNTVNTRKRK
SSLSRKSTPSVTERKSTKKSKLSPEFISRTKNGEEIKPTGSTNPGTDVRPLNDSSKEKHC
SLTDQPVLRKCVSHAKEYQCAFCLSSEESEASGPMVHYFDEKPVTADFEGGPKVIHCHRN
CTEWAPNVYFEDDNAINLEAEISRSRRIKCGFCGLKGAALGCFEKSCRRSFHVPCAKWTP
ECRWDMENFVMLCPLHAPSLLPCESSGSQHNSKKHTAKKVKICSRKHDTTSQSQIAHGSH
KKIVLCCSALSVQEKEVVSEFERVSKVTVLKTWDSGVTHVIASTDENGACRRTLKVLLGI
LEGKWILSIEWIKACMKETRPVDEERYEVNVDIHGIKDGPRLGRLRVVNKQPKLFDGYKF
YFMGDFIPSYKGYLQDLVIAAGGIVLHRKPVSADQNEILPTMNQHRTLIIYSLELPAKSN
PLEKDAIFSQRRCDAEALARPTCSKVASNTWILNSIAGCKLQSLAQ
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgggggatcttgaaaaaatgggaagagaactcaaatgtccaatctgtctgggtttactt
cattccgcagtttcactcacctgcaatcatcttttctgcaactcttgtatatttaagtct
atgaaatctgcttcttcttgtcctgtttgtaaaattcccttcactcgtcgagaggttcgt
cctgctcctcacattgacaacttggtcaccatctacaaaaacatggaagctgcttccggc
atcaatttattcggtactcaaaatccaactgctaccaaatcaccagatgatgaaatgcaa
ggtggaggtgatgctgagtctggtgagaagggaattggaggcactcatgaaaatcatgct
gaggaggaaaaaacacccacaagaaagaggtccaggaagaaacttaagacaagcacaata
agctcggagaagctaaagactagcaggaaaagtccggcttctaaccgtgcaaagccttct
tttccggctaagaaaagggttcaggttccacaagacattctttcggaaactccactaagg
aatttgaagacaggaggctctattactcaagttaacaaagagggaacacaagaggcttca
attaagagaaatgtaagtgcaattggaagtgaaaaaagggatcaggtgaaagaaccattc
ttttggttaagagaggagcaagatggtgaaaggttaagtgcacaaactgacgaggatcaa
attattgaaggtccaacaccaattcctccttcattcagtgacctcaaagacgctgatgat
gaaagccctttaaaacaagctccatcagatgaggtgcaaaataaaccatctgttgattta
tttgatagcgagttttttgaatggacgcaaaagccatgctcccctgaattattttcaagt
cccatcaaaacgcaggttgaagatactgatgaaattgatgaaaatatagaggaatgggtg
gcggcgttgcaagagaaacaaacaagtgttgatgcttgtaataccaactttgagaatccc
aatggtaatcaattggctgaagcgttgctaccaggcttgtcctctgaaattagaagttct
gatgatctaaatggaaaaaagaattctacaaagagaagcaggaaggctagagaaaaatct
aggcaagaccatattagggaactaaattgtctgagtgatgaaattaatatggatgcagat
ataacatcaaaagtcattgaggagcaatcattggactacaagcacaaagcctctaacctg
aaaaagtctaataaaagggggaagaaggtttcttttgttactagtacagaatcaacacct
ccaattgcttgtacagtctccaatatattaggagttcaaaacattggtgataggaagaca
gctaagaattcatatacatcagaatctaaacaagataatgagatgcaatttcctgagaag
attgctggaaaaaggcaggtaagaagatctggaaaacaaaggctggatgttgtggatgac
ccacctgaggatttaacttcagtgcaaaaccaatgcaaagagcttgctggatctgcttca
tccagtttaagactgcaaatggatagtaatagaaacactgtcaatactagaaaaagaaaa
agcagtttgtcaagaaaatccacgccttctgttacagaaaggaagagtactaaaaagtca
aaactttcccctgaattcatctctaggactaaaaatggtgaggaaattaagcctactgga
agtaccaatccaggtactgatgtcaggcctttgaatgattcatccaaagagaaacactgt
agtttgacggatcaaccggttttaaggaaatgtgtgagccatgccaaagagtatcaatgt
gctttctgtctctcgtcagaagaatcagaggcttctggtccaatggtgcactattttgat
gaaaaacctgtaactgctgattttgaaggaggacctaaagtcatacattgtcacaggaat
tgcacagaatgggccccaaatgtgtattttgaagatgataatgcaataaatcttgaagca
gaaataagtagaagccggagaatcaaatgtggtttttgtggacttaaaggagctgcactc
ggttgctttgagaaaagttgtcgcaggagctttcatgttccttgtgctaagtggactcct
gagtgtcgatgggatatggaaaattttgtcatgttatgccctctccatgctccctccttg
ttgccgtgtgaaagttcaggatcccaacacaatagcaaaaaacatacagcgaagaaggtt
aaaatctgtagccgcaaacatgacactactagccaaagtcagattgctcatggttctcac
aagaaaattgtgctgtgctgttcagctctgtccgtgcaggagaaggaagtggtttccgaa
tttgaaagagtgtcgaaggttacagttctgaaaacttgggattcaggtgttacccatgta
atagcatcaacagatgaaaatggggcatgcagaaggactctcaaagtattgttgggtatt
ctggagggaaagtggattctcagcattgagtggatcaaagcttgcatgaaagaaacaaga
cctgttgatgaagagcgttatgaagttaatgtcgacatccacggaattaaggatggtccc
cgtcttggaagattaagagtagtgaacaagcaaccaaagctttttgatggctacaagttc
tatttcatgggcgattttatcccttcatacaagggctatctgcaagaccttgtgatcgct
gctggagggatagttctgcacagaaaaccagtgtcagctgaccaaaatgaaatactgcct
actatgaatcaacaccgaaccctcataatctatagtcttgagcttcctgctaaatccaat
cctttggaaaaggatgcaatttttagccaaaggcgatgtgacgcagaggctttggcaagg
cctacttgttcaaaggttgcaagcaatacatggattctgaattcaattgctggctgcaag
ctgcaaagccttgctcaataa
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