Medicago truncatula (barrel medic): 25486300
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Entry
25486300 CDS
T01716
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
25486300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
25486300
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25486300
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
25486300
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
25486300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
25486300
NCBI-ProteinID:
XP_013463003
UniProt:
A0A072V6R5
LinkDB
All DBs
Position
2:11150183..11160657
Genome browser
AA seq
683 aa
AA seq
DB search
MEDSEGVLNFDFEGGLDAQPTAATAITSTAAVSTPIVQSDSYLPPSNGAAAAAPSVAEHT
AGNNPGRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPICRFFRLYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPIEDVLQKIQHLYSYNYNNSHKFSQ
QRGSNYNQQVEKSQFPQGINSANQGAVGKPLVAESGNGQQQQPVQQSQQQVSQNQSQNLA
NGQPNQANRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVEN
VILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKT
RHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYTEPDSELMAISIAAESKREEEKAKG
VNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGQAVGPAVQGRGRGRGGMMWPPHMHLG
RGARPIHGMQNFNPMMGDGLSYGPAGPDGFGMPDLFGMGPRGFGPYGPRFGGDFGGPPAG
MMFRGRPSNPGMFPGGGFGMMMNPGRGPFMGGMGVPGPNAPRGGRPVNMPPMFPPPPPPP
QNINRTGKRDQRPSDRNDRYGSGPEQGKSQDMLSQSGGPGDDMQHQQGYNKSQQDDRNDD
SESEDEAPRRSRHGEGKKRKGES
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgaaggagtcctcaacttcgatttcgagggcggtctcgacgcacaacct
accgccgccaccgcaatcacctccaccgctgccgtctccaccccgatcgtccaatccgat
tcctacttaccaccttccaatggagccgcagccgcggctccatctgttgctgaacatact
gccggtaataatcccggtcgacgaagcttccggcaaacggtgtgtcgtcattggctaagg
agtttgtgtatgaaaggtgaagcgtgtgggtttttgcatcagtatgataaagcgagaatg
cctatttgtcggttttttagattgtatggagaatgtcgtgagcaggattgtgtttataag
catactaatgaagatatcaaggagtgtaacatgtacaagttaggattttgtcctaatggg
cccgattgtcggtataggcatgcaaaatctcctggacctcctcctccaattgaagacgtt
cttcaaaagatccaacatttatattcttacaattacaacaactctcacaagtttagccaa
caaaggggttctaactataatcaacaagttgaaaagtctcagtttcctcaaggaattaat
tctgcaaaccaaggtgcggttggaaaaccattagttgcagagtcaggaaatggccagcag
cagcaaccagttcaacagtctcagcagcaagtcagccagaaccaatcacaaaatcttgct
aatggccagcccaatcaagccaatcgaacatcaacccctttacctcaaggaatatctagg
tattttattgtaaagagttgcaatcgtgaaaacttggagttgtctgtacaacaaggagta
tgggcaactcaaaggagcaatgaatcaaaactaaatgaagcatttgactctgtggaaaac
gtgatattgattttctcagtcaaccgtactcgacatttccagggttgtgcaaagatgaca
tccagaattgggggttctgttgctgggggaaactggaaatatgctcatggaacggcacat
tatggacgtaatttctctgttaagtggttgaagttatgtgaactatcattccacaaaact
cgccatttgagaaatccatacaatgagaacttaccggtgaagataagtagagattgtcag
gagctggaaccctctattggtgagcagttggcatccttgctatatactgagccagatagt
gaacttatggctatctcaattgcagcagagtctaaacgagaagaagagaaagcaaaggga
gtgaatccagataatggaggagaaaatccagatattgtcccatttgaagacaatgaagaa
gaggaagaggaagaaagtgatgaagaggaggagagctttggtcaagctgtagggccagct
gttcaaggaagaggtaggggcagaggtggtatgatgtggccccctcacatgcatcttggg
cgtggagcaagaccgatccatggaatgcaaaattttaatcctatgatgggcgatggatta
tcctatggacctgctggacccgatggttttggtatgccagatctttttggcatgggtccc
cgaggttttggtccatatggtcctaggtttggtggtgattttggaggccccccagctggc
atgatgtttcgaggtcgaccctcaaaccctgggatgtttcccgggggtggatttgggatg
atgatgaatcctggacgcggtccttttatggggggaatgggggttccaggtccaaacgca
ccaagaggtggtaggccagtcaatatgcctccgatgtttccaccacctccacctccacca
caaaatataaaccgcactggcaaaagagatcaaagaccaagtgatcggaatgataggtat
ggttcaggaccagagcagggcaagagtcaagacatgctcagtcaaagtgggggtcctggt
gatgacatgcagcatcagcaaggatacaacaagtcacagcaggatgatcggaatgacgat
agtgaaagtgaagatgaggcacctaggcggtcaagacacggagagggaaaaaaaagaaaa
ggcgaatcttag
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