Medicago truncatula (barrel medic): 25487016
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Entry
25487016 CDS
T01716
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25487016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25487016
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25487016
mRNA degradation factors
5'-3' decay
Decapping complex
25487016
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GFIT
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NCBI-GeneID:
25487016
NCBI-ProteinID:
XP_013464308
UniProt:
A0A072VAE8
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Position
2:35026780..35036128
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AA seq
880 aa
AA seq
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MVDMDGFGGGGDLGGPPGSGDLRQLGHVPVSGGAVFDASQYAFFGKDAVQEVELGGLEED
ARLPTFESNEEEFFFNREQDEDVRSLSDIDDLTTTFWKLNKAVSGPRNPGVIGERGSREN
STSDLAQRDDVHSWFDQNAYDSEGSIDGKRWSSQPQSSLAHLQNSKSLYRTSSYPEQLRQ
EQNYHLQHCSSEPVHNWLDQHIYDIETAHDEKRWSSQPHTSIPHLHESTPLYRTSSYPDK
QQELTRFSSEPILVQKSSFTSYPPPGGRSQQGSPSHSTGHLNIPYHTGAAAQMALSSQNR
PHFSNSALQLSGLNLGSHFGGNTRQYSTGSSPLSQRIQNQLVSQAGLYPGDRSNLLSNML
QQQLQLHNGSVSPHLMTQLQQQQHRLHHPVQQSAGYLSGFQSHLFNPHLSPSSSVNSKYD
HRHKSSQKGKHSHRLSHQGSDASSQKSESSSLQFRSKHMTSDEIESILRMQLAVTHSNDP
YIDDYYHQGRLAKKPSVAKLKHPFCPTQIKELPSRTRSSNDPHAFLQVDSLGRVSFSSIR
RPRPLLEADSSNSSIPGSSDLKISEKPLEQEPTFAARVTIEDGLCLLLDVDDIDRYLQSN
QPQDGGTQLRRRRQVLLEGLATSLQLVDPLGKNGHKVGLAAKDDLVFIRIVSVPKGRKLL
AKYLQLLLPGSDLMRIVCMTVLRHLRFLFGGLPSDPAAAVTTCNLAEVVCQCIRGMDLGA
LSACLAAVVCSAEHPPLRPVGSTAGDGASLILVSVLERATELLTDPQAACNYNMGNRSFW
QASFDEFFGLITKYCMNKYHSIMQSLLLQNAPNVDDIGSDAAKAISKEMPVELLRASLPH
TDDRQRKLLLDFAQRSVPVIGFNSNAGGSGGLVNSETVLS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggtggatatggatggttttggaggtgggggtgatcttggtggacctcctggttctgga
gatcttaggcaattgggtcatgttcctgtttcaggaggtgctgtttttgatgcatcacaa
tatgcattcttcggtaaagatgctgtccaggaagtcgagttgggagggttagaagaggac
gcccgtttgccaacttttgaatctaatgaggaggagttcttttttaatagagaacaggat
gaggatgtgagatctctttctgatattgacgatcttacaaccaccttttggaagttgaac
aaggctgtcagtggaccaagaaacccaggtgttattggtgaacgtggatccagagaaaac
tctacatctgatctggcacaaagagacgatgttcatagctggtttgatcagaatgcttat
gatagtgaaggttcaattgatggaaaaagatggtcatcacagccccaatcttctcttgcc
catttgcaaaattcgaagtccttgtacagaacatcttcatatcctgagcagctaaggcaa
gagcaaaactaccacctccaacattgctctagtgagccagttcacaactggcttgatcag
catatttatgatattgaaacagctcatgatgagaaacgatggtcatctcagccgcatacc
tcgattccacacttacacgaatcaacacccttgtacagaacatcttcatatcccgacaaa
caacaggagcttactcgtttttctagtgagccaatattggtacagaagtcttctttcact
tcttatcctccgccgggtggtcgatctcaacagggttctccaagtcatagtacaggccac
ttgaacattccatatcacactggagcagcagctcagatggcactatcatctcaaaatcga
ccacatttctccaattctgcgctacagttgagtggattaaaccttgggtcacactttggt
ggaaacacacgacaatattctactggttcctcccctcttagtcaacgaatacagaaccaa
ctggtcagccaagcagggttatatccaggagatcggtccaacctccttagtaatatgctg
cagcaacagttacagcttcataatggatcagtttctcctcacttgatgactcaattgcaa
cagcagcagcatagactgcatcatcctgttcagcaatctgcaggctacttgtcaggtttc
cagtcccatttattcaatccccacctttctcctagctcatccgtcaatagcaagtatgat
cacagacataaatcaagtcaaaaaggtaaacatagtcatcgtttatcacatcagggttct
gatgccagtagccaaaagagtgaaagcagttcattacagtttcggtccaagcatatgaca
agtgatgaaattgagagtattcttagaatgcagcttgctgtcactcacagtaatgatcca
tacatagatgactattaccaccaaggtcgtcttgcaaaaaaaccttctgtggctaagtta
aaacatcctttctgcccaacccaaataaaggaacttccttcccgaacacgttccagtaat
gatcctcatgcatttcttcaggttgattccctagggagggtttcattttcgtctattcgt
cggcctcgccctcttcttgaggctgattcttcaaattcttccatccctggtagctctgat
ctaaagatttcagagaagcctctagaacaggagcctacatttgctgccagagtcacaatt
gaggacggtctttgtcttcttcttgatgtagatgatattgatcgttacctacagtctaat
cagccacaagatggtggaacgcaattaagacgaagaaggcaggtcctattggaaggacta
gctacttcacttcaactggttgacccgctggggaagaatgggcacaaggttgggcttgca
gctaaggatgaccttgttttcataaggatagtatctgtccctaagggacgcaagctcctc
gcgaagtatcttcaattgcttcttcctggcagcgaccttatgcggatagtttgcatgacc
gtccttcggcatttaagattcttatttggtggtctcccctcggatccagcagctgcagtg
actacatgcaaccttgccgaggttgtttgccaatgtatccgtggaatggatcttggtgct
cttagtgcctgtcttgctgcagttgtttgttctgcagagcatcctcctctacgccctgtt
ggaagcactgctggagatggtgcttcccttattttggtatctgttcttgagagggctacc
gagcttctaaccgatccacaagcagcctgcaactataatatgggtaatcgttccttttgg
caggcctcatttgatgaattctttggtcttattactaagtattgcatgaataaataccac
agtatcatgcagtccctccttttacaaaatgcaccaaatgtggatgacattggatcagat
gctgctaaagcaattagtaaggaaatgcctgttgaactcttgcgcgcaagcctcccccac
actgatgaccgccaaaggaagttattactggatttcgctcagcgttctgttcccgtgatt
ggatttaacagtaatgccgggggcagtggaggtcttgtgaattcagagacagtgttaagt
tga
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