Medicago truncatula (barrel medic): 25487843
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Entry
25487843 CDS
T01716
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
25487843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25487843
03009 Ribosome biogenesis [BR:
mtr03009
]
25487843
04131 Membrane trafficking [BR:
mtr04131
]
25487843
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mtr04147
]
25487843
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
25487843
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
25487843
Membrane trafficking [BR:
mtr04131
]
SNARE
SNARE associated proteins
Others
25487843
Autophagy
Aggrephagy
Other aggrephagy associated proteins
25487843
Exosome [BR:
mtr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
25487843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
CDC48_2
AAA_5
TIP49
AAA_14
AAA_22
AAA_33
NPHP3_N
nSTAND3
AAA_28
RNA_helicase
AAA_18
Mg_chelatase
Parvo_NS1
IstB_IS21
AAA_17
AAA_7
Sigma54_activat
ABC_tran
Viral_helicase1
TsaE
AAA_lid_PRS2_C
Zeta_toxin
NACHT
AAA_19
NB-ARC
ResIII
Vps4_C
DUF815
AAA_3
ATPase_2
Sigma54_activ_2
SLFN-g3_helicase
bpMoxR
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
25487843
NCBI-ProteinID:
XP_039687061
LinkDB
All DBs
Position
2:46769369..46774260
Genome browser
AA seq
808 aa
AA seq
DB search
MSQPESSSDSKSGAGKKDFSTAILERKKAPNRLVVDEAVNGDNSIVAMHPQTMEKLGLFR
GDTILIKGKKRKDSVCIALGDDTCEEPRIRMNKVVRSNLRVRLGDVVSVHQCTDVKYGKR
VHILPIDDTIEGLTGNLFDAFLKPYFVEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEY
CTVAPDTEIFCEGEPVKRDDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG
AKAPKGILLSGPPGTGKTLIARAIANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAE
KNAPSIIFIDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID
PALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSYDVDLERISKNTHGYVGADLAAL
CTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHLHTALGTSNPSALRETVVEVPNV
SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE
CQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAG
GAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRH
SIFKSCLRKSPIAKNVDLGALARHTQGFSGADITEICQRACKYAIRENIEKDIEQERKRK
ENPEGMDEDLVDEIVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFR
FSNTATSAIVSDHLTTTTGGADEDDLYS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaacctgaatcatcatcggactcgaaatctggggctgggaagaaggacttctcc
accgcgattctggaacgtaagaaggcgccaaatcggcttgtcgtggacgaggctgttaac
ggtgataactctattgtcgccatgcaccctcaaaccatggaaaagttagggcttttccga
ggcgatactatcctcatcaagggaaagaaaaggaaggatagtgtttgtattgctcttggt
gatgatacctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcga
gttcggcttggagatgttgtgtctgtgcatcagtgtactgatgtcaagtatggtaaacgt
gtgcacattctgcctattgatgatacaattgaaggtctcactggaaatctctttgatgct
ttcttgaaaccctatttcgtggaagcttatcgtcccgtcagaaaaggagatctatttctt
gtgcggggagggatgagaagtgtagagtttaaggtcattgaaactgatcctggtgagtac
tgtacggttgctccagacactgagatcttctgtgagggggaacctgtgaaaagagatgat
gaagaaagacttgatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggca
cagattcgcgagttggtcgagcttccacttaggcatccacaactttttaagtcaattggt
gcgaaagcacctaaaggaattttgctttctggacccccaggtaccggaaagacattaata
gcaagagctattgctaatgaaactggagctttcttcttttgtattaatggaccagagatt
atgtccaaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaa
aagaatgcaccatccatcatctttattgatgaaattgattctattgcacccaagcgggac
aagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatggg
ctaaaatcccgtgctcatgttattgtcatgggggccactaatcgccccaatagcattgac
ccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaa
attgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctcatatgatgtt
gatttggagagaatttcaaaaaatactcatgggtatgttggtgctgaccttgctgctctt
tgcactgaagctgctctacaatgcattagggagaagatggacgtcattgacttagaggat
gagactattgatgctgaaatactaaattccatggcagttacaaatgagcatttgcatact
gcacttggaacaagcaacccatcagctctacgcgaaactgttgttgaggtgcctaatgtc
agctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagagactgttcaa
tatccggttgagcacccggaaaagtttgagaagtttgggatgtcaccatccaaaggagtt
ctcttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaa
tgtcaagctaacttcatcagtataaaaggcccagagttgcttacaatgtggtttggtgaa
agtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctc
ttttttgatgagcttgactccattgccactcagagagggagcagtgttggggatgctggt
ggcgccgctgatagagtgctaaatcaacttctgacagaaatggatggcatgtctgccaaa
aagactgtgttcattattggggcaactaacagacctgacatcattgatccagcacttctt
cggccaggccgtctagatcagttgatctatattcctctacctgatgaggattcccgtcat
tcgatcttcaagtcttgcttgagaaagtcaccgatcgcgaaaaatgttgatttgggagca
ttggctaggcatactcaaggttttagtggtgcagacattacagaaatatgccagcgagca
tgcaaatatgctataagagaaaacatagagaaggacatagagcaagagaggaagaggaag
gaaaaccctgagggcatggatgaagacttggtagacgaaatagttgcagagattaaagct
gctcattttgaggagtccatgaagtatgcacgtaggagtgtcagtgatgctgatatacgc
aaatatcaagcatttgctcagactctacaacaatcaaggggatttggaagtgaatttaga
ttttcaaataccgcaactagtgctattgtatctgaccaccttacaactactactggaggg
gcagatgaagatgatctatatagttag
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