Medicago truncatula (barrel medic): 25488062
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Entry
25488062 CDS
T01716
Name
(RefSeq) exopolygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Module
mtr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
25488062
Enzymes [BR:
mtr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
25488062
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
25488062
NCBI-ProteinID:
XP_013463175
UniProt:
A0A072VG89
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Position
2:complement(13890263..13896953)
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AA seq
491 aa
AA seq
DB search
MAPQADFAIAKIGYEIEKFFGRQKSFSNNSNPPATQNLCQYKFYPTYGATTVTKVVHTNV
EDLTCNEAASRFIAEKRKDQVQVKVINYVDAGPRKRPVFGPDIYRGINVAKDTLAPGEKI
INVMSFGAKPDGKSDCTQAFMDGWQAACKSKVQARLLIPSGRFLVSSMFFSGPCLTPGPI
TIQVVGTVVATTDISDYVDGEWLMFQKISGLKLIGGGTFDGQGQSSWKYAENCETNPTNQ
CVRAPSSIYFNQVTDGIIQNIKSKDPKGFHVFVTNSANIRLRLIKLNAPATSPNTDGLHI
SHSINVKISRSSVETGDDCVSMIQGVSNVTIKRIRCGPGHGISIGSLGKYPDEIEVSGIR
VQTCKLVGTTNGLRIKSWPDKYPGAATDINYSDITMENVKNPIIIDQEYECSPNCKKKPS
LVKIKNISFRNIRGTTTSPIAVDLKCSKLFPCKNVGLHNINLSLGAKKPTASKCANIKPI
YSGSQKPPPCR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcacctcaagcagattttgctattgctaagattggatatgaaattgaaaaattcttt
ggaagacagaaaagttttagcaataatagcaaccctccagctactcaaaatctttgtcaa
tacaaattttatccaacctatggtgctactactgttaccaaagtggtgcacacaaatgtt
gaagatcttacttgcaatgaagctgcttcaagattcatagcagaaaagagaaaagatcag
gttcaagttaaagttattaattatgttgatgctggtccaagaaaaaggccagtttttggt
cctgatatctacagaggtataaatgtagccaaagatactcttgctcctggtgagaaaatt
attaatgtcatgagttttggagcaaaacctgatggaaaatctgactgcactcaggctttc
atggatggatggcaagcagcctgcaagtccaaagtgcaagccaggcttctaatcccttca
ggaagattccttgtttcttcaatgttcttttcaggcccatgtttgactccagggcccata
acaatccaagttgtaggcacagttgtggccacaacagatatcagtgactatgtggatggt
gaatggctcatgtttcagaaaatatctggattaaaacttattggtggaggtacttttgat
gggcagggtcaatcttcatggaaatatgctgaaaactgtgaaactaatccaaccaatcaa
tgtgttagagcccctagtagtatttattttaaccaagttactgatggaattatacaaaac
atcaaatctaaagacccaaaaggctttcatgtatttgtcactaactctgcaaacattaga
cttcgactaattaagctcaatgcaccagctactagtccaaatactgatggccttcatata
agtcactcaatcaatgttaaaatatcaagaagtagtgttgaaactggtgatgattgtgtc
tccatgatacaaggagttagtaatgttaccatcaagagaatcaggtgtggtccaggacat
ggtatcagtattggaagtcttggaaagtatccggatgagatagaggtgagtggcattaga
gtgcagacctgcaaattagttggcacaaccaatggcctcagaatcaaatcatggccagat
aagtatcctggtgcagcaacagatatcaactacagtgacattacaatggaaaatgttaag
aatcctatcatcattgaccaagagtatgaatgctctccaaattgcaaaaagaagccttca
cttgtgaagataaaaaatataagtttcagaaatataagaggaaccacaacttctccaatt
gcagtggacttaaagtgtagcaaactattcccttgcaaaaatgttggacttcacaacata
aacctcagtcttggagccaagaagcctactgcctctaaatgtgccaacatcaaacctatc
tatagtggctcgcaaaaaccaccaccttgtcgatag
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