Medicago truncatula (barrel medic): 25488222
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Entry
25488222 CDS
T01716
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25488222
09122 Translation
03013 Nucleocytoplasmic transport
25488222
03015 mRNA surveillance pathway
25488222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25488222
03041 Spliceosome [BR:
mtr03041
]
25488222
03009 Ribosome biogenesis [BR:
mtr03009
]
25488222
03012 Translation factors [BR:
mtr03012
]
25488222
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
25488222
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
25488222
mRNA cycle factors
Stress granule specific factors
25488222
Spliceosome [BR:
mtr03041
]
Complex C
Other components
EJC/TREX
25488222
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
90S particles
Helicases
25488222
Translation factors [BR:
mtr03012
]
Eukaryotic type
Initiation factors
eIF-4
25488222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
25488222
NCBI-ProteinID:
XP_013463348
UniProt:
A0A072V6Z3
LinkDB
All DBs
Position
2:complement(15433601..15438332)
Genome browser
AA seq
406 aa
AA seq
DB search
MATASVVPANRRRTVTANEDMDFETTEGVKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQ
QRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALIVSPTRELASQTEKV
ILTIGDFINIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLV
LDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVS
AMHGDMPQRERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcttctgtggttccggcgaatcgccgacgaacggttacggcgaacgaggac
atggatttcgaaacaaccgaaggcgtgaaagcaatcggaagctttgaagagatggggata
aaagacgatttgcttcgtggaatctaccaatacggatttgagaaaccttctgcgattcaa
cagcgtgcggttgccccgattattcagggaagggatgttattgctcaggcgcaatctggt
actggaaagacctcgatgattgccttgacggtttgtcaggttgttgatacctccgtcaga
gaagtgcaagctttaattgtgtctccgacaagagaactggcctcacagactgagaaagtt
atattgacaattggggattttatcaatatacaagcccatgcttgcattggaggaaaaagt
gtgggagaagacattagaaaacttgagcatggagttcatgtcgtatctggaactcctggc
cgagtctgtgacatgataaagaggagaacattgcgcaccagggctatcaagttgctagtt
ctggatgaatctgatgaaatgttgagcagagggtttaaagatcagatttatgatgtgtat
agatatctcccaccggatcttcaggtttgccttatttctgctacgctacctcatgagatt
ctggagatgacaaacaagtttatgacagatcctgtgaggatccttgtaaagcgtgatgaa
ttgacattggagggcatcaagcaattttttgttgcagttgaaagggaggaatggaagttt
gatactctgtgtgatctatatgatactctcaccattactcaggctgttatattctgtaac
accaagcggaaggttgactggttaactgaaaaaatgcgtaacaataatttcaccgtctca
gcaatgcatggtgacatgcctcaaagagaaagagatgccattatgggtgaattccgtgct
ggaacaacccgagtattaataacaaccgatgtttgggctcgtggacttgatgtacaacag
gtttctctagttatcaattatgaccttccaaataatcgagagctctacattcatcggatt
ggtcgttctggacgttttgggcgaaagggtgttgcaataaattttgttaaaagcgatgat
atcaagattttgagagatattgagcaatattacagtacccagattgatgagatgccaatg
aatgttgctgatcttatataa
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