Medicago truncatula (barrel medic): 25489175
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Entry
25489175 CDS
T01716
Name
(RefSeq) probable ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25489175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25489175
03400 DNA repair and recombination proteins [BR:
mtr03400
]
25489175
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
25489175
Messenger RNA biogenesis [BR:
mtr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
25489175
DNA repair and recombination proteins [BR:
mtr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
25489175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Cas3-like_C_2
SAM_3
Motif
Other DBs
NCBI-GeneID:
25489175
NCBI-ProteinID:
XP_013460509
UniProt:
A0A072UZI8
LinkDB
All DBs
Position
3:31982297..31992070
Genome browser
AA seq
908 aa
AA seq
DB search
MDTTLSVLKDYFGFLSFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGI
VVSPLISLMQDQVMALKQRGIKAEYLSSAQKDYTVQSKAERGQFDILFMTPEKACTIPTS
FWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLLDVPYVGLTATATEKVRF
DITNSLKMNNPYVVVGSFDRPNLFYGVKQFNRGQSFIDELVEEVSKEVANGCSTIIYCTT
IKDVEQIYKSLTEVGINAGMYHGQMDGKSREESHRLFVRDEMQIMVATIAFGMGIDKPNI
RKVIHYGCPKNLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYAADLKSENQKRAVM
ESLLAAQQYCLSATCRRKFLLEHFGEKISAERCGNCDNCKVSKQQRDLSREAFLLMACIH
SCNGRWGLNMPIDILRGSRAKKIMDAQYDKLPLHGLGKTYQANWWKALGHQLISLGYLKE
VVRDTFRLISVSSKGEKFLASCRPDYQPPLVLPLVGELEEEENRSREEIKILPTSESEGF
SEAEGQLYQMLLEERLKLAKSVGTAPYALCGDQTIKKIALTRPSSKARLALIDGVNQHLV
TRYGEYFIQAIEKLSRELNLSLDGVPSIQTSEVRKVSPIVTNKSTKLSGAKFDAWKMWHE
EGLSLQKIANFPGRSAPIQEQTVAQYLMDAAQEGLPFDWPRFCEAIGLKQDYISAIQAAI
VKVGSADKLKPIKNELPEEITYPHIKAYLTMRTCGISLESIQSEGHQSVKDGEAVNNASN
LSEPPLETRNLESHIEADISTESTMEIDEVASSGPVNGCQVQKLPLSCEEEFTSKRLKIS
ETEEVNLIKLKATESSVVEWLKNHDEGATLTDMLEHFNGSNEDSIVELLNSLESDFLIYK
KGNMYRAM
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggataccacactctccgttctcaaggattacttcgggtttttgagttttcgaccttat
caaagagaggttattgagaaaattattgagaaaagggattgcttggtagtcatggctact
ggtagtggaaagtctttgtgttatcaagtacctccattggttgtgaaaaagactgggata
gttgtgagccctttaatatcattgatgcaagatcaggtaatggctttaaaacagcgaggt
atcaaagctgaatatctttcaagcgctcagaaggattacactgttcagagtaaagccgag
cgtggtcaatttgacattctgttcatgactcctgagaaggcatgcacaattcctaccagt
ttctggtccaacttgctaaaagaaggaattagtctttttgccgttgatgaagcacattgt
atatcggaatgggggcatgactttagggtggaatacaagcagttagacaagttacgtggt
gttctgttagacgttccttatgttggtctaactgcaactgctactgaaaaggttcggttt
gacatcaccaattccctgaagatgaataatccttacgttgtagttggttcatttgatcgc
ccaaatcttttttatggtgtcaagcaatttaaccgtggacaatcttttattgatgagctt
gtggaggaagtttcaaaagaagttgctaatggttgttcaactataatttactgcacaaca
atcaaagatgtagaacagatttacaagtcacttacggaagtaggtattaatgctggaatg
taccatggccaaatggatggaaaatcacgagaggagtctcatagattatttgttagagat
gaaatgcaaatcatggtggccacaattgcctttggcatgggcatagataaacctaatata
agaaaagtgattcactatggctgcccaaaaaatctagagtcttactaccaggaaagtggt
cgatgtggtagagatggtatagcttctgtttgttggctttactacacaagaagtgacttt
gcaaagggagatttttatgctgcagacttaaaatcggaaaaccaaaaaagagctgtgatg
gagtcattgctggctgcccaacaatattgtttgtcggcaacttgcagaagaaagttcttg
cttgaacactttggggaaaaaatttcagctgaaagatgtgggaactgtgataactgcaaa
gtctcgaagcagcagcgtgacttgtcaagagaagcatttcttctaatggcttgcattcat
tcatgcaacggcagatggggccttaatatgccgattgatatcctgcgtggttctcgagca
aagaaaataatggatgctcagtatgacaagcttccacttcatggacttggtaaaacatac
caagcaaattggtggaaagcactcggacatcaattaatttccctaggttatttgaaggag
gttgtccgtgacacattcagacttataagtgtcagttcaaaaggagagaaatttttggcc
tcttgtagaccagactatcaacctcctttggttttgccattggttggtgagcttgaagag
gaggaaaatagaagcagagaagaaatcaaaattttgcccacttcagaatcagaaggtttc
tcggaggctgagggacagctctaccaaatgcttttagaagaaagattaaagcttgcaaaa
agtgtcggaacagctccatatgctctatgtggtgatcaaacaatcaaaaaaattgctttg
accagaccatcttcaaaagcaaggctagcactcattgatggtgtgaatcagcacctagta
acaagatacggagagtattttattcaagctatcgagaaactatcacgagaattaaaccta
tcgttggatggtgtaccaagcattcaaactagtgaggtacggaaagtatctccgatagtt
accaacaaatcaacgaagttgtcaggagcgaagtttgatgcatggaaaatgtggcatgaa
gaaggtctttctcttcagaagattgctaactttcctggtagatcagctcctatacaagaa
caaactgttgctcagtatcttatggatgctgcccaagaaggattaccgtttgattggcct
agattctgtgaggcgatagggctgaaacaagattacatatcagctattcaggctgctatt
gtaaaagttggatctgccgataagttgaagccaataaaaaatgaattgccagaagaaata
acatatccgcacatcaaggcttacttgacaatgcgaacctgtggaatatccttagaaagc
attcaatctgaaggtcaccagtctgtgaaagatggtgaagctgtaaacaatgcatcaaat
ttgtcagagcctcctttagaaacacgcaacctggaaagtcatattgaagctgacatttct
acggaaagcacgatggaaattgatgaagtagcatcttctggacctgtgaatggttgccag
gtacagaagcttccattatcctgtgaggaggaattcacaagcaaacgtctgaaaatcagc
gaaacagaggaagtgaatttaattaagttgaaagctacagagagttctgttgtagagtgg
ctgaagaaccatgatgaaggggctactttgactgatatgttggagcacttcaatggatcc
aatgaagattccattgttgaactgctaaattcccttgagagtgactttttgatatataag
aaaggtaatatgtacagggctatgtaa
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