Medicago truncatula (barrel medic): 25489244
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Entry
25489244 CDS
T01716
Name
(RefSeq) TATA-box-binding protein isoform X1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
25489244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mtr03000
]
25489244
03021 Transcription machinery [BR:
mtr03021
]
25489244
Transcription factors [BR:
mtr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
25489244
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
25489244
RNA polymerase III system
TFIIIB
25489244
RNA polymerase I system
SL1/TIF-1B
25489244
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
FAM75
Motif
Other DBs
NCBI-GeneID:
25489244
NCBI-ProteinID:
XP_013460595
UniProt:
A0A072UXT0
LinkDB
All DBs
Position
3:complement(33418030..33424662)
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AA seq
236 aa
AA seq
DB search
MRANSSNTQLKTIMSTIPHTKRNRIRLFKYKGSHLRNHFPTRSRANYIEQQTPMLKSSRN
IVSTVNLDCKLDLNSIKLQAPTAEYNPQRHPAVIMRIRAPESKAQINSFGMMVCTGTKSE
SQSKLAASKYAAIIRKTGFPTKFKDFKIQEIVGSCDVKFPIHLQRLAHSHAACSSYNPVL
FPWQIYEMKQAKIVLHIFDSGKIHLKGTKSRDEIFTAFENIYPVLTEFRKNQQWYG
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgagagcaaacagcagtaatacccaattgaaaacaattatgtcaacgattccgcacacg
aaaaggaatagaatccggctttttaaatacaaaggatcgcatttgaggaatcattttcca
accagatcacgtgccaattatattgagcaacaaactccaatgctaaaatcaagccgaaat
attgtgtcgacagtcaatttggactgtaagttggaccttaattccatcaagcttcaagct
cctactgcagagtataatccccagcgtcatcctgctgtgattatgaggatcagggcacca
gaatcaaaagcacaaattaattcttttggaatgatggtctgtactggaactaagagtgag
agccagtcaaaattggcggcaagtaaatatgcagcaatcatccggaagacgggcttccct
actaaatttaaggattttaagattcaggaaattgttggctcctgtgatgtcaagtttccc
atacaccttcaacgtcttgctcattcccatgccgcttgctctagttataacccagtgttg
tttccttggcaaatctatgaaatgaagcaagcaaagatagtcttacatatattcgactcg
ggaaaaattcatctaaaaggaaccaagtcgagagatgagattttcacagcctttgagaac
atatatccagtgcttactgagttcaggaaaaaccaacaatggtatggataa
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