Medicago truncatula (barrel medic): 25489857
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Entry
25489857 CDS
T01716
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03030
DNA replication
mtr03410
Base excision repair
mtr03420
Nucleotide excision repair
mtr03430
Mismatch repair
mtr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
25489857
03410 Base excision repair
25489857
03420 Nucleotide excision repair
25489857
03430 Mismatch repair
25489857
03440 Homologous recombination
25489857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtr03032
]
25489857
03400 DNA repair and recombination proteins [BR:
mtr03400
]
25489857
Enzymes [BR:
mtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
25489857
DNA replication proteins [BR:
mtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
25489857
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
25489857
MMR (mismatch excision repair)
DNA polymerase delta complex
25489857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
REV3_N
divDNApol
Motif
Other DBs
NCBI-GeneID:
25489857
NCBI-ProteinID:
XP_013461571
UniProt:
A0A072V1N5
LinkDB
All DBs
Position
3:complement(47595181..47613035)
Genome browser
AA seq
1086 aa
AA seq
DB search
MNKSNSRKRPAAPPSQPPPSKHAASQEEEFMDEDVFLDENLISEDEESAILRDIEQRQAL
ASRLAKWNRPPLSQEYLSQSCSVLFQQLEIDYVIGESRKEFTPKISGPAAIIRIFGVTKE
GHSVCGKVHGFQPYFYINCPPGMRLEDLSSFQKVLEARMREANRNSNVQGNYVRDVVFVQ
KKSIMYYQQTDLHPFIKITVALPTMVASCRGILDRGIQIDGLGMKSFMTYESNVLFALRF
MIDCNIVGGNWIEIPAGKYKKTTKSLSYCQLEFDCLYSDLISHAPEGEYSRMAPFRILSF
DIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPLIRNVMTLNSCSPIVGVDVMSFDTEG
EVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAATLKIAEFPILGRIRNSRVRVKDTT
FSSRQYGIRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIIS
DLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFVYNYVEMARVTGVPISFLLSRGQSIKV
LSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMA
YNLCYCTLVTPENARMLNIPLESMNKTPSGETFVKSNLQKGILPEILEELLAARKRAKAD
LKEAKDPLEKAVLDGRQLALKISANSVYGFTGASIGQLPCLEISSSVTSYGRQMIEHTKK
LVEEKFTRLNGYDNNAEVIYGDTDSVMVQFGVSTVKDAMDLGKEAAEHISGTFTKPIKLE
FEKVYCPYLLISKKRYAGLFWTKEDSHDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIE
KNIPAAVQHVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERMRKRDAAT
APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPIL
KNASKELLHGSHTRSISISTPSNSGIMKFAKKQYTCIGCKALLSTGISTLCIHCKGREAE
LYCKTVAQVSDLEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQ
LDRWSF
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatccaactcacgcaagcgtccggcggcgcctccgtcacaaccaccaccgtca
aagcatgcagcgtcccaggaagaagagttcatggacgaagacgtcttcctcgacgaaaac
ctaatttccgaagacgaagaatccgcaattctccgtgacatagaacaacgccaagcccta
gcttctcgtcttgctaagtggaatcgtcctcctctctctcaggagtatctctctcaatct
tgtagcgttctttttcagcagttggagattgattatgtgattggagagagtcgcaaagag
tttacaccaaaaatatctggacctgctgctataattcgaatattcggggtaacgaaggaa
ggacacagtgtttgcggcaaggttcacgggtttcaaccatatttctacatcaactgccca
cctggaatgagactagaagatctctccagttttcagaaagtactcgaggcaaggatgaga
gaagccaatagaaacagcaacgtacaaggaaactacgttcgtgatgttgtctttgtgcag
aaaaagagcattatgtactatcagcaaacagatttacatccctttatcaaaattacggtt
gcactcccaacaatggttgctagctgccgtggtattcttgatagaggtattcagattgat
ggtcttggcatgaaaagtttcatgacttatgaaagcaatgtactttttgctcttcgtttc
atgattgattgcaacatagttggtggaaattggattgaaattcctgctggcaaatataaa
aagacaacgaaaagcttgtcttactgccagttagagtttgattgcttgtattccgatttg
attagtcatgctccagaaggggaatattcaaggatggctccgtttcgcattttgagtttt
gacattgaatgtgccggtcgcaaaggtcacttccctgaacctacccatgatcccgtgatt
cagattgctaatctggtaactctacaaggagaggaccagccattaattcgtaacgtgatg
acccttaactcatgttcccctattgttggtgttgatgtgatgtcatttgatacagaagga
gaagtcctgctagcttggagggatttcatccgtgaagtggaccctgatattattattgga
tataacatttgcaaattcgacttgccgtatcttattgagagagctgcgaccctaaagata
gcagaatttccaattctgggccgtatcaggaacagtagagttcgtgtaaaagatacaact
ttttcatcaaggcagtatgggatcagggaaagcaaagaagttaccgtagaagggcgagtc
caatttgatctgctccaggttatgcaaagagactacaagttaagttcgtattcattgaat
tctgtgtcggcacatttcctttccgagcagaaggaggatgttcatcattcaattatatct
gatcttcagaatggaaatgcagaaactagaaggcgccttgctgtgtattgcttgaaggat
gcatacctcccccaacgacttttggataagttgatgttcgtttacaattatgtggaaatg
gctcgtgtaacaggtgtcccaatttcctttctactttccaggggccagagcatcaaggtg
ctttctcaacttcttaggaaggcaaaacaaaagaatctggtcattcctaatgccaagcag
gcaggctcagaacaaggaacatttgaaggtgccactgtattagaggcaagggctggattt
tatgaaaagccaattgctactttggattttgcttccttgtatccgtctattatgatggca
tataatttatgttattgcacactggtgacccctgaaaatgctcgcatgctcaacatcccc
ctggagtcaatgaacaaaacgccatctggtgaaacatttgttaaatcaaatttacagaaa
ggcatacttcctgaaatacttgaagagctattagcagcccgtaaaagggcaaaagcagac
ttaaaggaggcaaaggatccccttgagaaggctgttctagatggcaggcagttggctctg
aagattagtgcaaattctgtatatgggtttacaggggcttctattggtcagttaccttgc
ctagagatatcatcaagtgtaacgagctatggtcgacaaatgattgagcacactaaaaag
cttgtggaagaaaagtttacaagacttaatggatatgacaacaatgctgaggtaatatac
ggagacacagattcagtcatggtacaatttggtgtttctactgtaaaagatgctatggat
ttggggaaagaagctgctgaacatattagcggaactttcacaaaacctatcaaactagaa
tttgagaaggtttactgtccatatctcctgattagcaagaagagatatgctggtttgttt
tggacaaaagaggatagtcatgacaaaatggacactaaaggtattgaaacagttcgaaga
gacaattgcttgttggttaaaaacttggtaaatgactgccttcacaaaatactgattgag
aagaacattcctgcggcagttcagcatgtcaagaatgcaatttcagatcttctcatgaac
cgtatggatttatcacttctggttattacgaagggtttgacaaagacaggagatgactat
gaagtaaagacagctcatgttgaactcgctgaaaggatgcgcaagcgagatgctgctact
gctccaaatgttggagacagagtaccttatgttattattaaagctgccaaaggtgccaag
gcctatgagagatcagaggatcctatctatgtgctagagaacaacatacccatagatcct
cagtactatcttgagaatcaaattagcaagccaattctaagaatttttgagccaattcta
aagaatgctagcaaggaacttctccatggaagccacacaagatctatttctatttctact
ccgtcaaacagcggtataatgaaatttgccaagaagcagtatacttgcattggttgcaaa
gctttacttagtactggaattagcactctctgcatacattgcaaaggaagggaagctgaa
ctgtactgtaaaactgttgctcaagtgtcggatctagaggtactttttgggaggttgtgg
acacagtgtcaggagtgccaaggttcacttcatcaggatgttctctgcacaagtcgagat
tgtccaattttttatcgacgcaaaaaggcacagaaagatatggctgaagcaaggttgcaa
ttggatagatggagcttttga
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