KEGG   Medicago truncatula (barrel medic): 25490343
Entry
25490343          CDS       T01716                                 
Name
(RefSeq) histone deacetylase 19
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03082  ATP-dependent chromatin remodeling
mtr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    25490343
   03083 Polycomb repressive complex
    25490343
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mtr03036]
    25490343
Enzymes [BR:mtr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     25490343
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     25490343
   HDAC complexes
    Sin3A-HDAC complex
     25490343
    BRAF-HDAC complex
     25490343
    REST complex
     25490343
    SHIP complex
     25490343
    MiDAC complex
     25490343
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     25490343
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    25490343
  Chromatin remodeling factors
   NuRD complex
    25490343
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 25490343
NCBI-ProteinID: XP_024633487
LinkDB
Position
3:58899218..58914272
AA seq 498 aa
MDVSGNSLPSSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHM
QVHKPFPARDRDLCRFHADDYVSFLRSITPETQQDHMRQLKRFNVGEDCPVFDGLYSFCQ
TYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVL
YVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDLRDIGYGKGKYYSLNVPLDDG
IDDESYHLLFKPLICKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRYMRSF
NVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPEHEYYEYFGPDYTLHVAPSNME
NKNTRHLLDNIRSKLLENLSKLQHAPSVQFQERPPDCDLGEEFDDHEDRDEHWDPDSGMD
VDVERDILQSKVKREIVEPPLNDLEDLKRTREHSRVSDTAVVETSVKALDICSQPVDEDN
VKDEENIVTDLAIETDLK
NT seq 1497 nt   +upstreamnt  +downstreamnt
atggatgtcagtggcaattctcttccgtcttctgcacctgatggggtaaagagaaaagta
tgctatttctatgatcctgaggttgggaattattattatggccaaggtcatcccatgaag
ccacatcgtatccgcatgacacatgcccttcttgcccactatggattgcttcagcacatg
caggtccacaagccttttcctgctagagacagggacctttgccgttttcatgctgatgat
tatgtttcatttcttcgaagcataacccctgaaacacaacaggatcatatgagacaactc
aaacgctttaacgttggtgaagattgtccagtctttgatggcctatactctttctgtcaa
acttatgctggaggttcagttggtggtgctgtcaagttaaatcacgatcaatgtgatatt
gctgttaactgggctggtggactgcatcatgccaagaagtgtgaggcttctggattttgc
tatgttaatgatatagtccttgcaatcttagaacttcttaaacagcacgagcgtgttctg
tacgtggacattgatatccaccatggagatggtgtggaggaagctttctacactactgat
agagtcatgactgtttctttccataaatttggtgattattttcctggtaccggcgacttg
cgtgatattggatatggaaagggaaaatactactctcttaatgttccacttgatgacggc
attgatgacgagagttatcatttgttgttcaaacctttaatctgcaaagtaatggaaatc
tttaggcccggtgcagttgttctccagtgtggtgcagactctttatctggagacaggttg
ggatgctttaatctttcaattaggggtcatgcagagtgtgtcagatacatgagatcattc
aatgttcccctcttgctactaggtggtggcggttacaccattcggaatgttgctcggtgt
tggtgctatgagacgggagttgctcttgggatagaagttgatgacaaaatgccagagcac
gagtattatgaatatttcggtccagattatacccttcatgttgccccaagtaacatggaa
aacaaaaatacccgacatttacttgacaatatccgatctaagctacttgagaatctttcg
aagctgcaacatgctcccagtgttcaatttcaggaaaggcctcctgattgtgatcttgga
gaggaatttgacgatcatgaagatagagatgagcattgggatccagattctggcatggac
gttgatgttgaacgcgatattctccaaagcaaagtcaagagagaaattgttgaacctccg
ctcaatgatctggaggacctgaaaagaactagagagcactcaagggtctcggatactgct
gtagttgaaacaagcgtgaaggctttagatatttgttctcagccagttgatgaagataat
gtgaaagacgaagagaatattgtgactgatttggccatagagacggatctgaagtga

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