Medicago truncatula (barrel medic): 25490534
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Entry
25490534 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 53, mitochondrial
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mtr03009
]
25490534
03036 Chromosome and associated proteins [BR:
mtr03036
]
25490534
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
25490534
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
25490534
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
25490534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
25490534
NCBI-ProteinID:
XP_013459579
UniProt:
A0A072V603
LinkDB
All DBs
Position
3:complement(18319353..18327855)
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AA seq
558 aa
AA seq
DB search
MTSTILRRSSSIFSRRFFVAAVEQLPIRHRSLALLSSAVNGKVGERLFHAKSGPLNFHSS
LVSRGAQLAVDYDHAEHDDGCGVNGDEGLEIAKLGISKEIVNALGKKGIAKLFPIQRAVL
EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNAKNGKRRDPLALVLAPTRELARQVE
KEFKDAAPNLEIISLYGGMPIQQQISKLGSGVDIVVGTPGRVIDLLKRGSLKLKDVNYVV
LDEADQMLQVGFQEAVETILQKLPSKRQTLMFSATMPSWIKNLTRNYLNKPLTIDLVGDS
DQKLADGISLYSIASNAYSKAGILVPLITEHAKGGKCIVFTQTKRDADRLSHIMAKSIKC
EALHGDISQTQRERTLTGFRNSYFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHR
SGRTGRAGKKGTAILVHTENQSRDVKTIERDVGCKFKELPKIAVESGSADMFGSTSSGRY
GSSGGRDRRSSSSSGSGRNGYGKSSGFGGSSSRKSGGGFEEFSGKTDRYGGGGFSSSSRS
GGFGKFGSGKSGRYGDRN
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcacaattcttagaagatcctcttccatattctcacggcgtttcttcgtcgcc
gccgtcgagcaacttccgatccgtcaccgtagcctcgccttgttgtcctccgccgtcaac
ggcaaagtaggagagaggctgtttcatgcgaaatctggaccgttgaacttccactcgtcg
ctggtatctcgtggtgcgcagcttgctgtggattacgatcacgcggaacacgatgatggt
tgcggtgtcaatggtgatgaaggattggagatcgcgaagcttgggatttctaaggagatc
gtgaatgcgttggggaagaaagggatcgcaaagctttttcccattcagagagctgtgctg
gaacctgcaatgcaagggagggatatgattggtcgagctagaacaggaactgggaaaact
cttgcttttgggatacccatcttggataagattattaagtttaatgctaagaatgggaaa
agaagggatcctttggctttggtgttagcaccaaccagagaacttgcacgacaagttgaa
aaggaattcaaggatgctgcacctaacttggaaataattagcctttatgggggtatgcct
attcagcaacaaattagcaaacttggtagtggcgtagatattgtagttggcacacctgga
cgtgttattgatcttctcaaaaggggttcactgaaactgaaggatgttaattatgttgtt
cttgatgaagctgatcagatgcttcaagtaggatttcaagaagcggtggagactatcttg
cagaagttgccttcaaagcgtcaaactcttatgttctcggcaacaatgccttcttggata
aagaatcttacgcgcaattacctaaataaacccttaacaattgatcttgttggagattct
gatcagaagttggcagatggaatttcactgtactccattgcatctaatgcctattctaaa
gcaggaattcttgtacctcttataacagaacatgctaaaggaggaaaatgtattgttttc
actcaaaccaaacgtgatgctgatcgtctatcacatataatggcaaaaagcattaaatgc
gaggccttgcatggagatatttcacaaactcagagagaaagaactcttactggctttaga
aacagctatttcaatgttttggtggcaactgatgttgcttcccgcgggcttgatatacca
aatgttgatcttgtaatacattatgaacttccaaataattcagagatatttgttcatcga
tctggacgaacaggacgtgccggtaagaaaggaactgctattcttgtccacacagaaaat
caatccagggatgtaaagacaattgagagagatgttggatgtaaattcaaagagttacca
aagattgctgttgaaagtggatcagcagacatgtttggcagcacgagtagtggtcgatac
ggctcttcgggaggtagggatcgtcgatcaagtagtagttctggatctggccgaaatggc
tacgggaaatccagtggttttggtggctctagttcaaggaagtcaggagggggatttgag
gaattttctggtaaaacagatagatacggtggtggaggatttagcagttcaagtcgttct
ggtggctttggaaagttcggctcaggtaaatctgggagatatggtgacagaaattga
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