Medicago truncatula (barrel medic): 25490766
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Entry
25490766 CDS
T01716
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25490766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25490766
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
25490766
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
25490766
mRNA degradation factors
3'-5' decay
Ski complex
25490766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
ATF7IP_BD
Motif
Other DBs
NCBI-GeneID:
25490766
NCBI-ProteinID:
XP_013460120
UniProt:
A0A072UXI0
LinkDB
All DBs
Position
3:complement(28056000..28074282)
Genome browser
AA seq
1334 aa
AA seq
DB search
MDPIQVSNELSFRVGFSGHSGHLRVEPLSSVERPKPEHSIPDFILPPAFPKETPESIKKY
IEETYLEPRLDTDEFAPEKVGKQWEFDWFDKAKVPLEPSVPRTVVVPIWEPPFRRPVKEK
WKPKFEEVSVSDLASGAVESGPLPRTSAKDFVRGSINNRPFRPGGLDDSQNLNRSLPPGA
SNGEWVREILNGGPAQTIPPSLKQGLDLGALKRYPLSWNVYKDADTPKGPLDENLSGLSV
QFDDLFKKAWDEDVVGEQEDGHLSEGETVTLEAEVDTTEVSSKASESAMSLDDILSADSE
GSQLHLEGLSDVVGQKQKLAWAKLEDSEEIAGRFHELIPDMALEFPFELDAFQKKAIYYL
EKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLL
TGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVDRGVVWEEVIIM
LPRHINIILLSATVPNTVEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGEFYKICER
EIFLPQGLRAAKDASRKKHLTAGVSSGPKPGTSAGHDNARGQKRENTPRTKQYGTNFSGT
GSGYHNNGNGQSRWRQEASMWLMLINKLSKKSLLPVVIFCFSKNRCDKSADSMTGTDLTS
SSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVESLLRRGIGVHHAGLLPIVKEVVEMLFCR
GVIKVLFSTETFAMGVNAPARTVVFDTVRKFDGKEFRQLLPGEYTQMAGRAGRRGLDNIG
TVILMCRDELPEESDLKHVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEF
HAQEKLPEMQQLLKTKLNQPKRVIECIKGEPTIEEYYDLYMEAETYNNQISEAILLSPNV
TPFLNTGRVVVIKSESAQDHLLAVIVKTPSPSNKLYIVFVIRPDMSFPVENASSGGNSQD
KSSTFDQGFFVMPKSRRGLVDEYTTSVSARKGRGVINIKLPHRGSACGMSYEVREVDIKE
FLCICSSKIKIDQVGLLEDVSSSVYAKTVKLLQDLKSDGNKYPPALDPVKDLKLREAKLV
ETYRKWTKLLEKMSQNQCNGCIKLAEHLKLAKEIKAHKEEVCSLQYQMSDEALQQMPDFQ
GRIDVLKEIGCIDEDLVVQMKGRVACEMNSGEELICTECLFENQLDELEPEEVVALMSAF
VFQQKNASEPSLTPRLSDAKNRLYKTAIRLGELQAQFNLPISPEEYAQENLKFGLVEVVY
EWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNSAAIMGNSALCKKMEIASNAIK
RDIVFAASLYITGV
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atggatccgattcaagtatctaacgaactctctttccgggtcgggttttccggccacagt
ggccacctccgtgtagaaccgctgtcctcggtggaacgccccaagccggaacactccatt
cccgatttcattctgccacctgcctttcctaaggagacacctgaatctataaagaagtat
atcgaagagacttatctagagccgcgattggacacggatgaatttgcacccgaaaaagtt
gggaagcagtgggaatttgattggtttgacaaggctaaagttcctctcgagccatcagtg
ccgcggactgtggtagttccaatttgggaacctccgtttcgacgtccagtgaaagaaaaa
tggaagccaaagtttgaggaggtgagtgtatctgatctagcatcaggagctgtcgaatct
ggaccattaccacgcacttctgcgaaggattttgttaggggaagcatcaacaatcgacct
tttcggccaggaggtttggatgattcgcaaaatctaaatagatctcttccgcctggtgct
tctaatggtgaatgggtgcgtgaaattttaaatggtggccctgcacagacaataccacct
agcctaaagcaaggattggaccttggtgcgctcaagcggtatccattgtcatggaatgtt
tacaaggacgcggatacaccaaagggcccgttagatgaaaatttgagtggattatctgta
cagtttgacgacttatttaagaaggcttgggacgaggatgttgttggagaacaagaagat
ggtcatttatcagaaggggagactgttacgttggaagctgaagttgatacgaccgaagta
tccagcaaagctagcgagagtgcaatgtcacttgatgatattttatcagctgactcagaa
ggatcacaactgcatttggagggattaagtgacgtggttggacaaaagcagaagctagct
tgggctaagcttgaagacagtgaagaaattgccggtcgctttcatgaacttattcctgac
atggcattagagtttcctttcgaattggatgcatttcagaagaaggctatttattatctt
gaaaagggagaatctgttttcgtggctgctcacacatctgccggaaagacagtagttgcc
gagtatgcctttgctctagcatcaaaacactgcaccagagctgtgtatactgctccaata
aaaaccatcagcaatcagaaatatagagatttctgtgggaagtttgatgttgggcttctt
actggtgatgtaagcttgaggccagaggcttcttgtctcatcatgaccacagaaatttta
agatcaatgctctatcgcggtgcagatataattcgagacattgaatgggtaatatttgac
gaggtgcactatgtcaatgatgttgatagaggtgtcgtttgggaagaagtaattatcatg
cttccacgacacatcaatatcatcctcctttctgccacggttcctaataccgttgaattt
gccgattggattggcagaacaaaacaaaaggaaatccgggttacggggacaacaaaaaga
cccgtcccattggagcactgccttttttactctggagaattttacaaaatttgcgagagg
gaaatatttctgcctcagggtttgagagctgctaaagatgcttcaaggaaaaagcatttg
actgctggtgtgagttctggaccaaagccagggacatcagcaggtcatgacaatgctcga
ggtcaaaaacgagaaaatacacctcggacgaaacagtatggaactaatttctctggaact
ggcagtggctatcacaataatggtaatggccaaagcagatggagacaagaagcttcaatg
tggttaatgcttatcaacaaactctccaaaaagtcgttactacctgtggttatattttgt
ttttctaagaatcgatgtgataagtctgctgatagcatgactggaactgacctcactagt
agctcagagaaaagtgagatccgtcttttctgtgacaaagcgttttcacgactgaaggga
tctgacagaaatttacctcaggttgttcgagtcgaaagtcttctccgtcgagggattgga
gtacatcatgctggtcttcttccaattgtaaaggaagttgttgaaatgctattttgccgc
ggtgttatcaaggtcttgttttcaacagagacatttgcaatgggagtcaatgcacctgct
agaacggtagtctttgatactgtaaggaagtttgatggcaaggaatttaggcagttatta
ccaggagagtatactcagatggcaggtcgtgctggcagaagaggacttgataatattggt
actgtcattttgatgtgccgcgatgaactcccagaagagagtgatttaaaacatgttatt
gttggaagtgcaactcgtcttgaatctcaatttcggctgacctatattatgattttgcat
ctccttcgagtggaagaattgaaggtagaggacatgcttaaaagaagttttgcagaattc
catgctcaggaaaaacttccggaaatgcaacagcttttgaagacaaagcttaatcagcct
aaaagggttattgaatgtataaagggtgagccaactattgaagagtattatgatttatat
atggaggctgagacatacaacaatcagatatcagaggcaattttgctctctccaaatgtc
acaccatttctcaatactggaagagttgtcgtaataaaatcagaatcagcccaggaccac
ttgcttgcggtgattgtgaaaactccttctccaagtaataaactgtacattgtttttgtg
attagacctgacatgtcattcccagtggaaaatgcctcaagtggtggcaattcacaggac
aagagcagtacatttgaccaaggtttttttgtaatgccaaaatcaagacgtggtcttgta
gatgaatatactacatctgtttctgctcgcaagggaagaggtgtcatcaacattaaattg
ccccatcgcggttctgcctgtggaatgagctatgaagtccgtgaagtcgatattaaagag
tttctgtgcatatgcagtagcaaaattaaaattgatcaagttggacttcttgaagatgtt
agcagttctgtttacgcaaagactgttaagttgctccaggatttgaaatccgatggaaat
aagtatcctccagctctggatccggtgaaagatctaaagttgagagaggcgaaacttgtg
gaaacataccgtaagtggaccaaattattggagaagatgtcccagaatcagtgtaatggg
tgtataaaattggcagaacacctcaagttagcaaaagagataaaagcacacaaagaagaa
gtctgttcccttcagtatcaaatgtcggatgaagcacttcaacagatgccagactttcag
ggccggatagatgttctaaaggaaattggatgcattgatgaagatctcgtagttcaaatg
aaaggacgagttgcttgtgaaatgaattctggggaggaattgatatgtactgagtgcctg
tttgagaaccagcttgatgaactggaaccagaagaagtagtggcgttaatgtctgctttt
gtgttccagcagaagaatgcatctgagccttcactcacacctaggctgtctgatgcaaaa
aatagattgtacaaaacagctataagactaggagagcttcaagcacagtttaatctccca
ataagccctgaagagtatgcccaagaaaatctcaaatttggtctcgttgaagtggtttat
gaatgggcaaagggtactccgtttgctgacatatgtgaacttactgatgttcctgaaggc
ttgatagtaaggaccattgtcaggttggatgagacatgtcgagagttcaaaaattctgca
gctattatgggtaattctgcgctctgcaaaaaaatggaaattgcttctaatgcaataaag
cgtgacattgtatttgcagctagcttgtatattactggcgtatga
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