Medicago truncatula (barrel medic): 25491103
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Entry
25491103 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25491103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
25491103
03009 Ribosome biogenesis [BR:
mtr03009
]
25491103
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
25491103
Spliceosome [BR:
mtr03041
]
Complex A
U1 snRNP components
U1 related factors
25491103
Complex B
25491103
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
25491103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
PRAI
AAA_30
Motif
Other DBs
NCBI-GeneID:
25491103
NCBI-ProteinID:
XP_013460474
UniProt:
A0A072UY57
LinkDB
All DBs
Position
3:31306076..31315710
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AA seq
561 aa
AA seq
DB search
MSYVPPHLRNAASSTTVSTNTGTLDNHHHHHHHNNNLAFSNSHSNSPSLFNASRRTSAAP
PSSRTIAAVPDTVFPKWQPSERVSRMNPDQIEEVRHRLNLDVTVSSDSLAAPAPIESFND
MCLHPSIMKDIAYHDYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLA
QPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESFKTAIVVGGTNIEKQRSELRAG
VEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLL
FSATMPVEIEALSKEYLASPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEAS
QAEKCGHPFPLTIVFVERKTRCDEVAEALIAQGLSAVSLHGGRSQSEREAALHDFRSSST
SILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFL
VSNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIALSKHLGPGAASINIEDKY
RFMIAASNSKGEGTADSAWDD
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgttcctccacacttgagaaacgcggcgagttcaaccaccgtgtccaccaac
accggaaccctagacaaccaccaccaccaccatcatcacaacaacaacctcgcattctca
aactcacattccaactctccttctctcttcaatgcctctcgccgtacctccgctgctcct
ccgtcgtcaaggaccatcgccgccgttcctgatactgtcttccctaaatggcaaccttct
gaacgcgtttctcgcatgaaccctgaccagattgaagaggtccgccatcggctaaatctt
gatgttactgtttcgtctgactctcttgctgcacctgcacctatagaatcatttaatgat
atgtgtttgcatccaagtatcatgaaggacattgcctatcatgattacaccagaccaact
tctatccaggcacaggccatgcctattgctctcagtggaagggatcttttgggttgtgct
gaaactggtagcgggaagactgcagctttcacaattcctatgatacagcattgcttggcc
caacctccaattcggcgcggagacggtcccttggcattagttttggctcctactagagaa
cttgctcaacaaatagaaaaagaggtccaagcttttagcagatctctcgagtcatttaaa
actgccatagttgtcggtggaactaacatcgaaaagcagaggtctgaactaagagcggga
gttgaaatagcagttgccacccctggaaggttcattgaccacttacaacaaggcaacact
tccctctctagaatttcttatgttgttctagatgaggcagatagaatgcttgatatgggt
tttgaaccgcagataagagagataatgagaagtcttcccgagaagcatcaaacactgctg
ttcagtgcaactatgcctgttgagatcgaagcattgtcaaaggagtacttagctagcccc
gtgcaagttaaggtgggaaaagtgagcagcccaacaactaatgtttcacaaactcttgtg
aaggtttctgaaaatgagaagattgatcgacttctagatttgcttgtagaggaggcatca
caggctgaaaagtgtggccatccatttccattgacaattgtgtttgttgagagaaagaca
aggtgtgatgaagttgctgaagcattaattgctcaaggattatctgcagtttctttgcat
ggtggccgcagtcaaagtgaaagagaggctgccttgcatgattttcggagtagctcaacg
agcattttggttgccaccgatgttgcatctcggggcttggatgtcacaggagtgtcacac
gtcatcaatcttgatcttccaaagaccacagaagattatatacaccgaattggaaggaca
gggcgtgcaggatcaactggcatagccacctccttttatactgatcgtgacatgtttctt
gtgtcaaatataaggaaagccatagctgatgctgaatctgggaacgctgtggcatttgct
actgggaaggttgccagaaggaaggagaaagaagcagcagctgcacacaaagaggcaaac
attgctttatcgaaacaccttggaccgggagctgcttcaattaacatagaagataagtat
agattcatgattgctgcctcaaacagtaaaggagagggcacggcggatagtgcatgggat
gattga
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