Medicago truncatula (barrel medic): 25491302
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Entry
25491302 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25491302
09122 Translation
03013 Nucleocytoplasmic transport
25491302
03015 mRNA surveillance pathway
25491302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25491302
03041 Spliceosome [BR:
mtr03041
]
25491302
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
25491302
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
25491302
Spliceosome [BR:
mtr03041
]
Complex C
Other components
EJC/TREX
25491302
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
25491302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
25491302
NCBI-ProteinID:
XP_013454647
UniProt:
A0A072UHT1
LinkDB
All DBs
Position
4:2588520..2597134
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AA seq
426 aa
AA seq
DB search
MGELKDTEVYEEELIDYEEEDEKALDSTKPTTESVKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLC
HTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALT
RDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKLTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDT
STYMPN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaattgaaagatactgaagtttacgaggaagagcttatcgattacgaagaagaa
gatgaaaaagctcttgattctactaaacccactactgaatccgtcaaaaagggctacgtt
gggatccatagttcgggattccgagacttcctgttgaaaccagagcttctccgagccatt
gtagattcagggtttgagcatccttcagaagtgcaacacgaatgcatcccccaggcaatt
ttaggaatggacgtcatttgccaagcaaaatctgggatgggaaagactgctgtttttgtt
ctgtcaacacttcagcaaattgatcctgttcctggtcaggttgcagcacttgttctttgc
cacacgagagaactggcttatcagatttgccacgaagttgagaggttcagcacatatctt
ccagatataaaagttgctgttttctacggtggtgtcaacatcaaggttcacaaagatttg
ctcaagaatgagtgcccacacattgttgttggaacacctgggaggattcttgccctgact
agagataaggaccttggtttgaagaatgtgaggcattttatacttgatgagtgtgacaag
atgctggaatcactcgacatgagaaaagatgtgcaagagattttcaaattgactccccat
gataaacaagtgatgatgttttcggctacactcagcaaggaaatccgacctgtttgcaag
aaattcatgcaagatcccatggaaatttatgttgatgatgaggccaaattgactcttcat
ggtcttgttcagcactacattaaattacaagagccagagaagaatcgtaagctgaatgat
cttcttgatgctcttgacttcaaccaagttgttatttttgtcaaaagtgttagcagagca
gcagaattgaacaagttgcttgttgagtgtaacttcccatcaatatgcatacattctgga
atgtcacaggaagaaagattgaagcgatacaagggcttcaaagaggggaagcaaagaatt
ctcgtggcaacagatttagtagggagggggattgatattgagcgtgttaatatagtcatc
aactatgacatgcctgattctgctgatacctatcttcacagggtgggtagagctggtaga
tttggcaccaaggggcttgcgattacctttgtgtcttctgctggtgactctgaagttctt
aatcaggtgcaatctaggtttgaggttgatataaaggagcttcctgaacaaattgacacc
tccacatacatgcctaattga
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