Medicago truncatula (barrel medic): 25492156
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Entry
25492156 CDS
T01716
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
25492156
03015 mRNA surveillance pathway
25492156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25492156
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
25492156
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
25492156
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
25492156
NCBI-ProteinID:
XP_039689700
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All DBs
Position
4:25976780..25981121
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AA seq
473 aa
AA seq
DB search
MAEEPSQPPSAVESLSFEALIIDENKSSPNLPGGPNDSNIETEVNSGYSPYTSAATFEEL
SLSPELLKGLYVEMGFIKPSKIQEITLPMILNPPHKDLIAQARNGSGKTTCFVLGMLSRV
DPNMKAPQALCICPTRELAIQNNEVLQKMGKYTGISSELAIPSMDKIPPSRRPPIMAQVV
IGTPGTINSLKNHKKLGVTRLKILVFDEADQMLAQDGFKDDSLRIIKEDLGXNDMGKMMV
TKDWLVFLQVLLFSATFDDTVKNFATRIVAKKEHNEYFVKKEELSLEAVKQYKVKCTDEL
AKIEVIKDYIFELGENVGQTIIFVRTRNSAKMLHKSLVDFGYEVTSIQGALQTEERDTII
KEFKDGLTQVLISTDVLSRGFDQDQVNLVINYDLPLKYTRGQEPEPDCEVYLHRVGRAGR
FGRKGAVFNLICHESEQMVMSKIEEHFGIHVEEVREKSVGDYKNALKKAGLLY
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaaccttcacaacctccctccgctgtagaaagcctatcgttcgaagcatta
attatcgatgagaacaaaagttctcccaacttgcccggcggtcctaatgactctaatatt
gaaacggaggttaactcggggtactctccttacacatctgccgcaacattcgaagagctt
tccctctctccggagctactgaagggactctatgtggagatggggtttataaagcctagc
aaaattcaagaaataaccttgccgatgattcttaaccctccacataaggatttgattgca
caggcacgtaatggttctggtaaaaccacttgttttgtcctcggaatgctcagtcgtgtt
gatccaaacatgaaggctcctcaagctctctgcatatgccctactagagagttagctatt
cagaacaatgaggttctccaaaagatgggaaagtacacgggcattagttcggaacttgca
attcctagcatggacaaaattccaccatcaagacggccacctattatggctcaggtggtt
attggtactcctggcacaattaatagcttgaagaatcataagaaactcggggtgacgagg
ttaaagattctcgtttttgacgaggctgaccaaatgcttgctcaggatgggtttaaagat
gattctctaaggataataaaagaagacttaggttaaaatgatatgggtaagatgatggtg
accaaggattggcttgtgtttcttcaggttcttttgttttctgctacatttgatgacact
gtcaagaacttcgctacaaggattgttgcgaagaaggagcataatgaatattttgtgaag
aaagaggagctatctttagaagcagtgaagcagtacaaagtgaaatgtaccgatgaactc
gctaagattgaagtgattaaagattatatattcgaattaggagagaatgtggggcaaact
attatatttgtgcgcactagaaacagtgcaaaaatgttgcacaaatctcttgttgatttt
ggctatgaggttacttccatacaaggtgctcttcaaactgaagagagagacacaatcatc
aaggaattcaaagatggtttgactcaagttcttatctcaaccgacgttctttcccgtggc
tttgatcaggatcaggtcaatttggttatcaactatgatcttcccctcaagtacactcgt
ggccaagaaccggagcctgattgtgaggtctatttgcacagggttggaagggctgggaga
tttgggcgcaagggggctgtatttaacttgatatgccatgaaagtgagcaaatggtcatg
tcaaagattgaagaacattttggcatccatgtagaagaggtgcgagaaaaaagtgttgga
gactataaaaatgctcttaagaaagctggtttactttactga
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