KEGG   Medicago truncatula (barrel medic): 25492370
Entry
25492370          CDS       T01716                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    25492370
   03410 Base excision repair
    25492370
   03420 Nucleotide excision repair
    25492370
   03430 Mismatch repair
    25492370
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    25492370
   03400 DNA repair and recombination proteins [BR:mtr03400]
    25492370
Enzymes [BR:mtr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     25492370
    6.5.1.6  DNA ligase (ATP or NAD+)
     25492370
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     25492370
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    25492370
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     25492370
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     25492370
   NER (nucleotide excision repair)
    Other NER factors
     25492370
   MMR (mismatch excision repair)
    Other MMR factors
     25492370
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 25492370
NCBI-ProteinID: XP_013455924
UniProt: A0A072UVT2
LinkDB
Position
4:29093370..29101218
AA seq 777 aa
MLALHFKSCFSLPFTTRISVKSSSSLFPFILSLPLSSIPRRAMSSKPPPSAFDKLMSGAR
AAAKKKPSPPSSSPKKRKSPTPPSPLKTPDTVQNPNNNLKTLETVQKPEETVHEEPPSKI
RNTSSSSKGIVAELKEKVPQLKKKPASFDPSSVVCWEKDKPVPFLFLCLAFDMINEESGR
IVITDIVCNLLRTVIHATPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRT
EQQIKIQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFKTFHLIAKESGKDSQEKKKN
HIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLTALGQAAVYTEEHSKPPPEIQSPFE
EAAKIVKKVYSVLPDYDKIVSALLKDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNK
FQDVEFTCEYKYDGERAQIHFLENGSVEIYSRNAERNTGKFPDVVTAVSRLKKTSVTSFI
LDCELVAYDRTKQRILPFQVLSTRARKNVALSDIKVDVCVFAFDLLYLNGQALLQENLKI
RREHLYTSFDEESGFFQFATSTTSNDVEEIQKFLDKAIDASCEGLIIKTLHEDATYEPSK
RSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIG
TGFKEEVLEERSTSLRSKVIPKPKAYYKCGESINPDVWFDASEVWEVKAADLTISPVYRA
AVGIVDSNKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYNAQKHNHNDKQDDNEDD
NT seq 2334 nt   +upstreamnt  +downstreamnt
atgttggcattgcatttcaaatcgtgtttctctcttccgttcactactcgcatttccgtc
aaatcttcttcttcactcttccctttcattctctcactccctctctcctccattcctcgc
cgtgcaatgtcgtcaaaaccaccaccctccgccttcgacaaactcatgtccggcgcacgc
gccgccgccaagaaaaaaccctctccaccttcctcatctcctaagaaacgaaaatcccct
actcctccatcgccactcaaaaccccagataccgttcaaaaccctaataacaacctcaaa
accctagaaaccgttcaaaaacccgaagaaactgttcatgaagaaccgccgagcaagatc
cgaaacacatcatcatcttcgaagggaatagtcgctgaattgaaggaaaaggttccgcag
ctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgctgggagaaagacaaa
cctgttccgtttttgtttctctgtttggcgtttgatatgattaacgaagagagtgggagg
attgtgatcactgacattgtgtgtaatttgttgagaactgtgatacatgctacaccggaa
gatcttgtgcctgttgtttatttatcagcgaatagaattgcgccggcgcatgaagggttg
gaattgggaattggtgatgcttcgattattaaggcgcttgccgaggcgtgtggaaggact
gagcaacagattaagattcagtataaggaaaaaggtgacttaggtttagttgcaaaagct
agccgttcttcccagtctatgatgcggaagcctgatgctttgactattaggaaggttttc
aaaacatttcatcttattgcaaaggaatctggaaaagacagtcaagagaagaaaaagaac
cacataaagtcacttcttgttgctgcaactgactgtgaacctctctatataatccgtttg
ctacagacaaaattgcgaattggatatgctgagcaaactctcttaactgccttaggccaa
gctgctgtgtacactgaagaacattctaaaccacctcctgaaattcagtctccttttgaa
gaggctgctaaaattgttaaaaaagtatattctgttcttcctgattatgacaagattgtg
tctgcactccttaaggatggtgtatgggaacttccaaagaagtgtgattttactcctggt
gttccagttgggcctatgctgtcaaaagcaaccaagggtgtatctgaaattctaaataag
tttcaggatgtagagtttacgtgtgaatacaaatacgatggagagcgtgctcagatacat
ttcttggagaatggctcggtagagatttacagtagaaatgctgaacggaacactgggaag
tttcctgatgttgttactgcagtttcaaggttaaagaaaacatctgtaacatcatttatc
cttgattgtgaacttgttgcatatgatcgtacaaaacagagaatccttcctttccaggtg
cttagtacccgtgcccgcaaaaatgtagctttgagtgacataaaggttgatgtttgtgtc
tttgcttttgatttgttgtaccttaatggccaagcacttcttcaggaaaacttgaaaatc
cgtagagagcatctctatacctctttcgacgaagaatctggattctttcagtttgcaaca
tcaacaacatcaaatgatgttgaggagattcagaaatttcttgacaaagccattgatgca
agctgtgagggattaattattaaaacattacatgaagacgccacatatgaaccctccaag
cggtcactcaactggctgaaactgaagaaagattatatggaaaatataggggactcacta
gatttggtacctattggtgctttccatggtcgtgggaaacgtacaggagtgtatggtgct
tttctccttgcttgctatgacaacgataatgaggagtttcaaagcatttgtaagatagga
actggattcaaagaagaagtgcttgaagaacgttctactagccttcgctctaaagtgatt
cccaaaccaaaggcatactataaatgtggagaatcaatcaatcctgatgtatggtttgac
gcaagtgaggtgtgggaggtgaaagctgcagacctgaccattagccccgtttaccgagct
gcagtgggcatagtagattccaataagggcatatctcttagatttccgcgtctagttcga
gtacggcctgacaaagcacccgagcaggcctcctcgtctgagcaggttgctgaaatgtat
aatgctcaaaaacacaatcacaatgacaaacaggatgacaatgaagacgattga

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