Medicago truncatula (barrel medic): 25493936
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Entry
25493936 CDS
T01716
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
25493936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtr03400
]
25493936
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
25493936
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
MLD
FadA
Motif
Other DBs
NCBI-GeneID:
25493936
NCBI-ProteinID:
XP_013458054
UniProt:
A0A072V1T7
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All DBs
Position
4:54399911..54410771
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AA seq
941 aa
AA seq
DB search
MDENFDGFNDKLPELKLDSKQAQGFLSFFKTLPHDPRAIRFFDRRDYYTAHGENATFIAK
TYYHTTTALRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLEVYEGSSSNWQLAKS
GTPGNIGSFEDVLFANSEMQDSPAVVALSLNFRENGCTIGLGFVDLTKRLLGMAEFLDDS
HFTNVESALVGLGCKECLVPIERGKSIEYKMLCDVLTKCGVMLTERKKSEFKTRDLVQDL
GRLVKGSIEAVQDLVSGFEFAPGALGALLSYAELLADESNYENYTLRRYNLDSYMRLDSA
AMRALNILESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNDINSRLDVVQA
FVEDTVLRQDLRQHLKRISDIERLVHNLQKGKAGLQHVVKLYQSSIRLPYIKSALDRYDG
QFSSMMKSRYLKDLELLTGADRLNKFIELVEICVDLDHLENGEYMISSSYDTTLTGLKEQ
QELLESQIHDLHKQTAIDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRTKLNTQFIVL
ETRKDGVKFTNTKLKKLGDKYQQILEEYKSYQKQLVVKVVGISASFSEVFESLAELISEL
DVLLSFADLASSCPTPYTRPDITSSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKS
WFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGV
STFMQEMLETSSILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKAPTLFAT
HFHELTALADENGSNDTHKQIVGVANYHVSAHIDASTRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVALAREKAAELEDFSPSALSLMESTEEVGSKRKRVFEADEMSKGAVKARQI
LEAFVALPLETMDKTQAWQEVRKLKDNLEKDAQHCHWLQKF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaacttcgacggattcaatgataaactccccgagctcaaactagattccaag
caagcacaagggtttctttcgtttttcaaaaccctacctcatgatccgagggccattagg
ttctttgaccgtcgggattactataccgcccatggtgagaatgcaacattcattgccaaa
acctactatcacactactactgctctgcgacagttgggtagtggatcaaacgctctttcc
agtgtgagtgtcagtaggaacatgttcgaaacaatagcccgtgatctactcttggagaga
acagaccatacacttgaggtctacgagggcagcagctctaactggcaactggccaaaagc
ggtacacctggtaatattggcagttttgaagatgttctgtttgctaacagtgaaatgcaa
gattctccagctgttgttgcgctgtcacttaacttccgtgaaaatgggtgcaccattgga
ttaggctttgttgatctaactaagagactacttgggatggctgaattcctcgatgacagt
cacttcacgaatgtggagtcagcattggttggtcttggatgcaaagaatgccttgtacca
attgagcgtggaaaatctattgaatacaaaatgttgtgtgatgtgttgactaaatgtggt
gtgatgctgactgagagaaagaaatctgagtttaagactagagatctggtacaggatctt
ggaaggcttgtcaaaggttctatagaagcagttcaagatttagtgtctggatttgaattt
gcaccgggtgctttaggggcactgctctcttatgcagagttacttgcagacgaaagcaat
tatgaaaattatactctgcgtaggtacaatcttgacagttacatgaggttagattctgca
gccatgagggcacttaatatcttagaaagcaaaactgatgcaaacaaaaatttcagttta
tttggtctcatgaataggacctgtacagctggaatgggaaaacgactattgcatatgtgg
ctaaaacagccattattagatgtaaacgatattaactccaggttggatgtagtacaagca
tttgtagaggacaccgtgcttcgccaagatctgagacagcatctgaaaagaatatcagac
attgagcgactggtgcacaatcttcagaagggaaaagctggtctacaacatgttgttaaa
ctttatcagtcaagtataagactgccttacattaaaagtgctctggacaggtatgatgga
cagttttcttcaatgatgaagagcaggtatttgaaagatttggagttattgactggtgct
gatcgcctaaacaaatttattgagcttgtagaaatttgtgttgaccttgatcatctagag
aacggggaatacatgatttcttcaagttatgacactacgctaactggactgaaggagcag
caagaattactggagagccaaatacatgacttgcataaacaaactgccattgatcttgat
ctgcctgtagataaggcattaaagttagacaaggggacacaatttggacatgtttttaga
atcacaaagaaggaagagccgaaaataaggacaaagctcaacacccagtttatcgtgctg
gaaacccgtaaagatggagtgaagtttaccaacactaagctaaaaaaattaggggacaaa
tatcaacaaattcttgaagagtacaaaagttatcaaaaacagttggttgtaaaagtagta
ggaatttcagcatctttctctgaggtgtttgaatctttagctgaattgatttccgaattg
gacgtgttactaagctttgctgatttggcttctagttgtcctactccctatacaagacct
gacatcacctcatcggacgaaggagatattattttagaaggtagtagacacccttgtgtg
gaggctcaagactgggtgaatttcataccaaatgattgtaagcttatcagaggaaaaagt
tggtttcaaataataacagggcctaacatgggtgggaaatcaacatttatccggcaggtg
ggagtgaatattttgatggctcaagttggttgctttgttccatgtgacaaagcgagcata
tctgttcgtgattgcatttttgctcgtgttggtgcaggtgattgccaacttcgtggagtt
tctacctttatgcaagaaatgcttgaaacttcatcaatattaaaaggagctaccgacaag
tccttgataatcattgatgagttgggacgtgggacatcaacttacgacggatttggtctt
gcttgggccatttgtgagcacattgttgatgtgatcaaagcacctactttatttgcaacc
cactttcatgagctgactgcattagccgatgaaaatggcagcaatgatacacataagcaa
attgttggtgtggcaaattatcatgttagtgcacatattgatgcatcaactcgcaagcta
actatgctatacaaggtggaaccaggagcttgtgatcagagtttcggtattcatgtcgct
gagtttgcaaacttccctgaaagtgttgtcgccttagctagagaaaaggcagcagaattg
gaagatttttctccttctgccctatccttaatggaatctacagaagaggtgggttctaaa
cgtaagagagtgtttgaagctgatgagatgtctaaaggggccgtaaaggctcgccagatt
cttgaagcatttgttgctttgccactagaaaccatggacaaaacgcaagcttggcaagaa
gtaaggaaattgaaagataatttagagaaggatgcacaacactgtcattggttgcaaaag
ttctag
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