KEGG   Medicago truncatula (barrel medic): 25494198
Entry
25494198          CDS       T01716                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    25494198
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mtr03019]
    25494198
Messenger RNA biogenesis [BR:mtr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     25494198
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd EIF3I WD40_Gbeta Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_Aladin NBCH_WD40 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_NUP159_NUP214 WD40_RFWD3 eIF2A Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_WDR41 Ge1_WD40 Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_WDR75_2nd Cytochrom_D1 CFAP43_N Beta-prop_WDR11_1st Tricorn_2nd BBS2_Mid Beta-prop_pof12 Beta-prop_WDR11_2nd PD40 WD40_like WDR54 Beta-prop_LRRK2 Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 25494198
NCBI-ProteinID: XP_013458438
UniProt: A0A072URP5
LinkDB
Position
4:complement(60304554..60307454)
AA seq 321 aa
MKLAGIKSIDNAHDDSVWAVTWAPATATRPPLLLTGSLDETVRLWKSDDLVLERTNTGHC
LGVASVAAHPLGSIAASSSLDSFVRVFDVDSNATIATLEAPPSEVWQMRFDPKGAILAVA
GGGSASVNLWDTSTWELVVTLSIPRVEGPKPSDKSGSKKFVLSVAWSPDGKRLACGSMDG
TISVFDVQRAKFLHHLEGHFMPVRSLVYSPYDPRLLFSASDDGNVHMYDAEGKALVGTMS
GHASWVLCVDVSPDGAAIATGSSDRTVRLWDLNMRASVQTMSNHTDQVWGVAFRPPGGND
VRSGRLASVSDDKSISLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaactcgccggaatcaaatcgatagacaacgctcacgacgactccgtttgggcagtc
acatgggcaccggcaaccgccacccgaccacctctccttctcaccggctccctcgacgaa
acggtacgcctatggaaatccgatgaccttgttctcgaacgcaccaacaccggccactgt
ctcggcgtcgcttccgtcgctgctcaccctctcggctcaattgccgcttcttcttctctt
gatagctttgttcgtgtctttgatgttgattctaatgccactatcgctactcttgaagct
cctccttctgaagtctggcaaatgcgtttcgatcccaagggtgccattctagcagttgct
ggtggaggtagtgcatcagtcaatctttgggacacttctacgtgggaacttgttgtcacc
ctatcaattcctcgtgtagaaggacccaaacccagcgacaaaagtggcagcaagaaattt
gtcctatctgttgcatggagccctgatggaaaacgacttgcttgtggctcaatggatggc
accatttctgtttttgatgtgcaacgagccaaatttttgcatcaccttgaaggccacttc
atgcctgtgcgttctcttgtttattctccttatgatccaaggctactgttttcagcttca
gatgatggtaatgttcacatgtatgatgctgagggaaaagccttagttgggaccatgtca
ggacatgctagttgggttttatgtgtggatgtgagcccagatggggcagctattgccaca
ggttcaagtgatagaactgttaggctatgggatcttaacatgagggcgtctgtgcagacg
atgagcaaccacacggaccaagtgtggggagtggcatttagaccacctggaggaaatgat
gtgcgaagcggtcggcttgctagtgtatcagatgataagagcatatcgctgtatgattat
tcctga

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