KEGG   Medicago truncatula (barrel medic): 25495223
Entry
25495223          CDS       T01716                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    25495223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mtr03019]
    25495223
   03036 Chromosome and associated proteins [BR:mtr03036]
    25495223
Messenger RNA biogenesis [BR:mtr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     25495223
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     25495223
    COMPASS/SET1 complex (yeast)
     25495223
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd EIF3I Beta-prop_WDR75_1st Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_SPT8 WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_NOL10_N PAC11 WD_LRWD1 Beta-prop_SCAP Beta-prop_VPS8 PD40 Tricorn_2nd
Other DBs
NCBI-GeneID: 25495223
NCBI-ProteinID: XP_013450864
UniProt: A0A072U5A3
LinkDB
Position
6:complement(1934278..1936937)
AA seq 340 aa
MTASLTELDDDIVRTMSIGAVFSDYVGKIYSIDFHRKDDLLVTAGEDDSVRLYDIVNAKL
LKTTYHKKHGTDQICFTHHPSSVICSSRYNLESTGESLRYLSMYDNRCLRYFKGHKQRVV
SLCMSPINDSFMSGSVDHSVRLWDLRVNACQGILHVRGRPTVAYDQQGLVFAVAMEGGAI
KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLSTTNNNIYVLDAYGGDKRCGF
SLEPSHGTSIEATFTPDGKYVVAGSGGGTMHAWSIDRNHEVACWSSHIGVPSCLKWAPRR
AMFAAASTVLTFWIPNNEPNLKAEEYSGTDTEAGLQPQSQ
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgacggcctcacttacagagcttgatgacgacattgtccgcaccatgtccataggagcc
gttttctccgactacgttgggaagatatattcgattgatttccatcgtaaggatgattta
ttggtcacagctggtgaggatgactcagtgcgactctatgacattgttaatgctaagctg
ttgaagaccacttatcataagaaacatggtactgatcaaatatgctttactcatcaccct
agttctgtcatatgctcttcaaggtacaatttggagtctaccggagaatcgttgcgatat
ttatcaatgtatgataaccgctgcctacgatacttcaaagggcataaacagagagttgtt
tctctctgcatgtctcctatcaatgatagcttcatgtctggttctgtcgaccacagtgta
aggttatgggatctacgtgtaaatgcatgccagggaatcttacatgtacgcggtagacct
actgttgcttatgaccaacaaggtctggtcttcgccgttgcaatggaaggcggggctatt
aagttgtttgattcacgttcgtatgacaagggtcccttcgacacttttcttgttggtggt
gatactgccgaggtttgtgatattaaattcagcaatgatggcaaatcaatgcttctgtct
acaactaataacaacatatatgttcttgatgcatatggaggagataaacgctgcggattt
agtttggaaccatctcatggtacctcgatagaggctacatttaccccagatgggaagtat
gtcgtagcaggctctggaggcgggaccatgcacgcttggagtattgacaggaatcacgaa
gtagcatgttggagcagccatattggtgtgccttcgtgcttgaaatgggctcctcgtcga
gccatgtttgctgcagcctcgactgttctcacattttggataccaaacaacgaaccgaat
ctgaaagctgaagaatatagtggcacggacaccgaagcaggacttcagccccaaagccag
tga

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